Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31111
         (703 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15620.1 68418.m01828 F-box family protein contains F-box dom...    29   3.0  
At1g54450.1 68414.m06211 calcium-binding EF-hand family protein ...    28   5.2  
At2g22260.1 68415.m02643 oxidoreductase, 2OG-Fe(II) oxygenase fa...    27   9.1  
At1g64480.1 68414.m07310 calcineurin B-like protein 8 (CBL8) ide...    27   9.1  
At1g35570.1 68414.m04416 hypothetical protein                          27   9.1  

>At5g15620.1 68418.m01828 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 440

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -3

Query: 545 ALGQLLANPPLLVESLLAHLS*SNWKGLRDTSNPSI 438
           A  +LL+  P+L E ++  L+  +WKG R  S+P++
Sbjct: 163 AFTRLLSASPVLEELVIDRLNWEHWKGSRFVSSPTL 198


>At1g54450.1 68414.m06211 calcium-binding EF-hand family protein
           contains Pfam profile: PF00036 EF hand
          Length = 535

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 14  DAINYGHKKWHIFKTRRFRNYKHFYLTYIK 103
           DA+ +  ++  I K  R+ +Y+HFY+ Y K
Sbjct: 293 DAMQHADEEEDINKVLRYFSYEHFYVIYCK 322


>At2g22260.1 68415.m02643 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein contains Pfam profile PF03171:
           oxidoreductase, 2OG-Fe(II) oxygenase family
          Length = 314

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 434 IKKSLPYMRPVIMSFSNSCLGDRMIC 357
           + K +P+ RP I  F  SCL  R  C
Sbjct: 126 LDKHIPWTRPTIRVFGRSCLQPRDTC 151


>At1g64480.1 68414.m07310 calcineurin B-like protein 8 (CBL8)
           identical to calcineurin B-like protein 8 (GI:15866276)
           [Arabidopsis thaliana]; similar to CALCINEURIN B SUBUNIT
           GB:P25296 from [Saccharomyces cerevisiae]
          Length = 214

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 473 WKGLRDTSNPSIIIKKSLPYMRPVIMSFSNSCL 375
           WK L    NPSI+   +LPY++ V ++F +  L
Sbjct: 177 WKELV-AKNPSILKNMTLPYLKEVTLAFPSFVL 208


>At1g35570.1 68414.m04416 hypothetical protein
          Length = 236

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 473 WKGLRDTSNPSIIIKKSLPYMRPVIM 396
           WKG  D   P  + K++L +MR + M
Sbjct: 73  WKGKNDVYKPQFLTKETLNHMRTISM 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,485,808
Number of Sequences: 28952
Number of extensions: 286215
Number of successful extensions: 599
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)