Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31110
         (448 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    25   5.3  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    25   7.0  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   7.0  
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M...    24   9.3  
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    24   9.3  

>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 304 EHVDTGTDTVVRGNP*TSNL 245
           E++ TGT  VVR  P T N+
Sbjct: 329 ENISTGTSNVVRNKPTTVNI 348


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -2

Query: 276 WLGEIHRHQILNSTMHVKI*CPSFNGIETLWVQLNANRSN 157
           W+   H  +  +    ++    S N I T W Q+N+N +N
Sbjct: 261 WISYRHLQKAFHQIPILRRQAASANAISTPWNQVNSNSAN 300


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 34  LIGPSIQTRLHFTFSCTSLSPNPV*FNL 117
           L G  ++T ++  +SC  L PN   F +
Sbjct: 901 LTGDKVETAINIGYSCNLLDPNMTIFRI 928


>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 243 NSTMHVKI*CPSFNGIETLWVQLNANRSNV 154
           +ST+H    CP  + I TL   + A  SN+
Sbjct: 124 SSTLHSNPYCPEHHSIRTLPSAVTATTSNI 153


>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 267 PLTTVSVPVSTCSLF*ELIYELNASFVIQCHRQSVFLFLKYDS 395
           P TT++V +S   +  E  Y+L    V   H     +F++ DS
Sbjct: 146 PNTTITVSISLAEIIEETPYDLLQPNVNSSHTPGETVFVQKDS 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,884,762
Number of Sequences: 5004
Number of extensions: 38375
Number of successful extensions: 57
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)