Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31110
         (448 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26269| Best HMM Match : LRR_2 (HMM E-Value=9.6)                     28   4.0  
SB_48395| Best HMM Match : MAM (HMM E-Value=0)                         27   7.1  

>SB_26269| Best HMM Match : LRR_2 (HMM E-Value=9.6)
          Length = 68

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 346 SFNVIGNPCFYS*NTIRRHEFEFDCPPMK 432
           SF ++   C     TIRRH  + DC P++
Sbjct: 29  SFPLVATDCPTDATTIRRHRRQLDCKPIE 57


>SB_48395| Best HMM Match : MAM (HMM E-Value=0)
          Length = 901

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 221 ILTCMVEFKI*CLWISPNHCVCSGI 295
           I+   V FK+   W++P HC+  G+
Sbjct: 429 IIASKVAFKVPDSWVTPKHCLKQGL 453


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,674,116
Number of Sequences: 59808
Number of extensions: 260382
Number of successful extensions: 440
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)