Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31110
         (448 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr...    28   3.6  

>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical
           protein C27F2.8 protein.
          Length = 1715

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 20/82 (24%), Positives = 43/82 (52%)
 Frame = -2

Query: 399 PSNRILRIETRIAYDIE*QNLRLAHKLILKKGSM*IPEQTQWLGEIHRHQILNSTMHVKI 220
           P  RI+RIE ++ +D+   N+ LA +L+    S+ + ++T  +   H   +     + K+
Sbjct: 365 PHQRIIRIENQLPFDVAIFNITLAPELV-SHFSVRLIDRTALIRSGHISPVFVLKYNKKL 423

Query: 219 *CPSFNGIETLWVQLNANRSNV 154
             P+F+   T+++  N +  N+
Sbjct: 424 -PPTFDN-STIYLHTNVSTFNL 443


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,351,020
Number of Sequences: 27780
Number of extensions: 211883
Number of successful extensions: 384
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)