Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31109
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    29   0.93 
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    27   2.1  

>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +3

Query: 303 RSEATKTFEDETRRIRADTAALIHRARSVVPRAKSLAPLDTIYSYSYGEPIPYRFSNDAY 482
           ++  +K +ED T    A +    +  R  + R+++L P   +  Y YG+P P R S  A 
Sbjct: 178 KNHLSKIYEDHTSEKGASSVISSNITRQGIKRSRTL-PW-AVDPYRYGDPDPKRTSTSAD 235

Query: 483 IAK 491
           I++
Sbjct: 236 ISQ 238


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -2

Query: 738 SLTVAFSTARPAAASLSSRKTRAGSRH 658
           SLT  F+T+ P+ ASLS +K   GS H
Sbjct: 281 SLTAEFTTSSPSTASLSDKK-NPGSVH 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,844,348
Number of Sequences: 5004
Number of extensions: 56324
Number of successful extensions: 171
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)