Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31109
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0448 - 34005581-34005655,34005735-34005830,34006669-340076...    32   0.56 
12_01_0017 - 127617-127775,127920-128000,128284-128395,128486-12...    29   3.0  
11_01_0017 - 129261-129335,129352-129426,129565-129645,129929-13...    29   3.0  
06_03_0147 + 17236158-17236808                                         29   3.0  
04_04_1633 + 34928139-34928511,34928700-34928774,34929385-349294...    29   3.0  
03_05_0257 + 22439915-22440275,22440280-22440627,22440962-224410...    29   3.0  
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542...    29   3.0  
12_01_0598 + 4890006-4890290,4890901-4890987                           29   3.9  
08_02_0463 + 17450935-17451180                                         29   3.9  
01_06_0560 + 30244814-30244871,30244979-30245140,30245725-302457...    29   3.9  
04_04_0118 - 22889608-22890816,22891990-22892261,22892306-228931...    28   6.9  
05_07_0314 + 29162075-29163436,29163520-29163900,29164911-29165441     28   9.1  

>03_06_0448 - 34005581-34005655,34005735-34005830,34006669-34007616,
            34007684-34007851,34007908-34008099,34008164-34008346,
            34008414-34008590,34008667-34012074
          Length = 1748

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 182  RVRHESSYRPRCRTVNQFSRHAVGGPVGPTRRVEVTL 72
            R R E+S +    +   +SRHAV  PV  TR ++V L
Sbjct: 1579 RTRSETSNKLHINSAGYYSRHAVPEPVSVTREIKVPL 1615


>12_01_0017 -
           127617-127775,127920-128000,128284-128395,128486-129538,
           129617-129705,130136-130309,130566-130687,130790-130924,
           131132-131494,131561-131728,131850-131889
          Length = 831

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 529 TIFPSITSQPRSSLDA-ATSRACTTPVRRPSPTVGHFTRSSAS 654
           T  P     P SS+ A A   A  + +R PSP+VG FT+  AS
Sbjct: 296 TFSPYSQDNPSSSVVAPARISAKPSALRMPSPSVGFFTQGKAS 338


>11_01_0017 -
           129261-129335,129352-129426,129565-129645,129929-130040,
           130131-131177,131256-131347,131773-131943,132150-132253,
           132367-132501,132583-132724,132803-133059,133126-133337,
           133417-133454
          Length = 846

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 529 TIFPSITSQPRSSLDA-ATSRACTTPVRRPSPTVGHFTRSSAS 654
           T  P     P SS+ A A   A  + +R PSP+VG FT+  AS
Sbjct: 315 TFSPYSQDNPSSSVVAPARISAKPSALRMPSPSVGFFTQGKAS 357


>06_03_0147 + 17236158-17236808
          Length = 216

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 341 SNSRRHCGFDPPGSLCGAARQVLSTTRHHL 430
           S+ +RH G   PG L  A R  L T  HHL
Sbjct: 43  SHRQRHGGMPSPGDLAAALRGRLLTEDHHL 72


>04_04_1633 +
           34928139-34928511,34928700-34928774,34929385-34929483,
           34929736-34929908,34929990-34930066,34930182-34930301,
           34930385-34930472,34930610-34930716,34930814-34930871
          Length = 389

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +1

Query: 223 PWSSVSWTESLTDAA-QHWPSLP 288
           PW  VSW ES +    QH+ SLP
Sbjct: 17  PWDDVSWAESTSSTVLQHYNSLP 39


>03_05_0257 +
           22439915-22440275,22440280-22440627,22440962-22441015,
           22441390-22441763
          Length = 378

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -2

Query: 402 WRAAPQSEPGGSKPQCRREFDGSHLRKSWLLRS 304
           WR  P   P    P+ RRE DG   R+ W  RS
Sbjct: 11  WRPVPHEAPPLPLPRLRRE-DGQEKRRRWPFRS 42


>03_02_0071 +
           5425722-5427154,5427259-5427464,5428445-5428686,
           5428788-5429570
          Length = 887

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +1

Query: 205 GSGSAHPWSSVSWTESLTDAAQHWPSLPSMTS 300
           G G+A  WSS S +   T       SLPSMTS
Sbjct: 264 GGGAAEAWSSASASSPPTTTTASRRSLPSMTS 295


>12_01_0598 + 4890006-4890290,4890901-4890987
          Length = 123

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 444 RMNMSRWCRVVLRTWR-AAPQSEPGGSKPQCRREFDGSHLR 325
           R+++      VL +WR  A +  PGGS+P    E  G+  R
Sbjct: 47  RLDVDERMGTVLASWRKTAGRGRPGGSRPAAEAEIQGADPR 87


>08_02_0463 + 17450935-17451180
          Length = 81

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -3

Query: 332 IFESLGCFGAQEVIDGRDGQCWAASVSDSVQLTEDHG-WADPDPHHVMRHIR 180
           +F SL    +  +ID +DG   AAS    V   EDHG WA P    V   ++
Sbjct: 6   LFLSLALSLSLSLIDLKDGWQTAASPPRRVDRKEDHGHWAAPSEDAVTNDVQ 57


>01_06_0560 +
           30244814-30244871,30244979-30245140,30245725-30245786,
           30246170-30246214,30246358-30246363,30246424-30246624,
           30246735-30248024
          Length = 607

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
 Frame = -3

Query: 416 WC*GLGAR----HHRASPVDQSRSVGANSTGLIFESLGCFGAQEVIDGRDGQCWAASVSD 249
           W  GLG      H   + +   + V    TG    SL C      +   DG+ W   +  
Sbjct: 323 WTFGLGDNGQLGHGTTATICSPQPVDGLPTGSFLISLDCGLFHTTVVSSDGEVWCWGMER 382

Query: 248 SVQLTEDHGWADPDPHHVMRHIRVR 174
            + L  D  ++  D    +R IRV+
Sbjct: 383 GLGLCPDASFSGVDSGDALRPIRVQ 407


>04_04_0118 -
           22889608-22890816,22891990-22892261,22892306-22893131,
           22893311-22893534,22893620-22893936,22894035-22894294,
           22894723-22894923,22895015-22895190,22895445-22895718
          Length = 1252

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 573 RGNLACVHYSGKKAFSNRRPLYKELSIRDDVNLLSFYAKTG 695
           +  +AC  Y+G++     R  Y E  +R DV      A+TG
Sbjct: 90  KAQIACWMYTGERQVGALRRRYLEAVLRQDVGFFDTDARTG 130


>05_07_0314 + 29162075-29163436,29163520-29163900,29164911-29165441
          Length = 757

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -3

Query: 119 AVGGPVGPTRRVEVTLVYHG*CSCYRSGFTRDG 21
           A  G +  +RR   TLV  G C C R G T  G
Sbjct: 637 AARGALVASRRATTTLVVSGRCRCRRPGVTARG 669


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,810,810
Number of Sequences: 37544
Number of extensions: 471711
Number of successful extensions: 1610
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1608
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)