Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31109
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039038-8|AAM81097.1|  874|Caenorhabditis elegans Hypothetical ...    33   0.21 
AF039038-7|AAM81098.1|  942|Caenorhabditis elegans Hypothetical ...    33   0.21 
AC024791-29|AAL32249.2| 1599|Caenorhabditis elegans Lipid deplet...    33   0.21 
Z81528-1|CAB04282.1|  345|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AL117203-9|CAB60420.3|  675|Caenorhabditis elegans Hypothetical ...    30   2.0  
Z83220-1|CAB05700.2|  440|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z78062-4|CAB01498.2|  341|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF098993-5|AAC67468.1|  325|Caenorhabditis elegans Hypothetical ...    29   4.6  
X98600-1|CAA67197.1|  511|Caenorhabditis elegans alpha nicotinic...    28   6.1  
X98599-1|CAA67196.1|  511|Caenorhabditis elegans alpha nicotinic...    28   6.1  
U88175-2|AAB42282.2|  511|Caenorhabditis elegans Uncoordinated p...    28   6.1  

>AF039038-8|AAM81097.1|  874|Caenorhabditis elegans Hypothetical
           protein K06A5.8a protein.
          Length = 874

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 257 PTPPSTGHLCRR*LLA-LRSNQDFRR*DPSNSRRHCGFDPPGSLCG 391
           PTP    HLC    L  L  ++DF+  +PS++R  C F+    LCG
Sbjct: 143 PTPEDYRHLCALLTLPKLSDHEDFKNWNPSSARVEC-FNKVNQLCG 187


>AF039038-7|AAM81098.1|  942|Caenorhabditis elegans Hypothetical
           protein K06A5.8b protein.
          Length = 942

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 257 PTPPSTGHLCRR*LLA-LRSNQDFRR*DPSNSRRHCGFDPPGSLCG 391
           PTP    HLC    L  L  ++DF+  +PS++R  C F+    LCG
Sbjct: 143 PTPEDYRHLCALLTLPKLSDHEDFKNWNPSSARVEC-FNKVNQLCG 187


>AC024791-29|AAL32249.2| 1599|Caenorhabditis elegans Lipid depleted
            protein 3 protein.
          Length = 1599

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 19/46 (41%), Positives = 22/46 (47%)
 Frame = -2

Query: 180  GTSRVELPTEMSDGKSVQPSRCRWTCRADASCRSHSRIPWLMLVLS 43
            GT+R  LPT   D KS+QP           S   H R PW  LVL+
Sbjct: 922  GTTRSRLPT---DPKSLQPPAASTASTGSGSFVPHQRKPWTALVLA 964


>Z81528-1|CAB04282.1|  345|Caenorhabditis elegans Hypothetical
           protein F35E2.1 protein.
          Length = 345

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
 Frame = +3

Query: 294 DFLRSEATKTFEDETRRIRADTAALIHRA--RSVVPRAKSLAPLDTIYSYSYGEPIPYRF 467
           +F+     K FE+E + I++    L      +SV+P   SL  L   + + +G P+P  F
Sbjct: 215 NFVILRFVKHFENENKNIQSKIIQLTQSLLIQSVIPVIVSLPLLLLSFEFYFGIPMPSSF 274

Query: 468 SNDAYIAKLLVPLRSVADSI 527
            +  Y    L P      SI
Sbjct: 275 GSTWYALTFLGPFLMPLSSI 294


>AL117203-9|CAB60420.3|  675|Caenorhabditis elegans Hypothetical
           protein Y48C3A.12 protein.
          Length = 675

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 526 STIFPSITSQPRSSLDAATSRACTTPVRRPSPT 624
           ST   + TS P +S+ AAT+   TT   +PSPT
Sbjct: 616 STSTTAYTSTPTASIPAATAITTTTAPPKPSPT 648


>Z83220-1|CAB05700.2|  440|Caenorhabditis elegans Hypothetical
           protein C34B7.1 protein.
          Length = 440

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 645 LSIRDDVNLLSFYAKTGSRPPVWPSRMQQLNCY 743
           + I +DVNL + Y   G  PP+ P R   + CY
Sbjct: 198 VKICNDVNLCNNYCNPGQTPPI-PQRQPLVRCY 229


>Z78062-4|CAB01498.2|  341|Caenorhabditis elegans Hypothetical
           protein F16D3.6 protein.
          Length = 341

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +3

Query: 294 DFLRSEATKTFED-ETRRIRADTAALIHRARSVVPRAKSLAPLDTIYSYSYGEPIPYRFS 470
           +F+     K FE+ +++RI+   + LI   +SV+P   SL  L   + + +G P+P  F 
Sbjct: 215 NFVILRFVKHFENIQSKRIQLTQSLLI---QSVIPVIVSLPLLLLSFEFYFGIPMPSSFG 271

Query: 471 NDAYIAKLLVPLRSVADSI 527
           +  Y    L P      SI
Sbjct: 272 STWYALTFLGPFLMPLSSI 290


>AF098993-5|AAC67468.1|  325|Caenorhabditis elegans Hypothetical
           protein T10B11.6 protein.
          Length = 325

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 224 GWADPDPHHVMRHIRVRHESSYR 156
           GWA  +P H+ ++I+V ++  YR
Sbjct: 75  GWAGANPKHIDKYIKVYNDEGYR 97


>X98600-1|CAA67197.1|  511|Caenorhabditis elegans alpha nicotinic
           acetylcholine receptorsubunit protein.
          Length = 511

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
 Frame = +3

Query: 231 LRELDRIAYRRRPALAISAVDDFLRSEATKTFEDETRRIRADTAALIH--RARSVVPRAK 404
           L+ L ++ + RRP      +DD+      + F+D+ +      A  +H  R  +V    +
Sbjct: 363 LKWLPKLLFMRRP------IDDY-----EEKFDDKKKPKDGKIALSVHAHRVSNVGNNIR 411

Query: 405 SLAPLDTIYSYSYGEPIPYRFSNDAYIAKLL 497
           +    DTI    Y  P+   F N  +IA+LL
Sbjct: 412 NATIDDTIQKMYYSPPVVKAFENICFIAELL 442


>X98599-1|CAA67196.1|  511|Caenorhabditis elegans alpha nicotinic
           acetylcholine receptorsubunit protein.
          Length = 511

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
 Frame = +3

Query: 231 LRELDRIAYRRRPALAISAVDDFLRSEATKTFEDETRRIRADTAALIH--RARSVVPRAK 404
           L+ L ++ + RRP      +DD+      + F+D+ +      A  +H  R  +V    +
Sbjct: 363 LKWLPKLLFMRRP------IDDY-----EEKFDDKKKPKDGKIALSVHAHRVSNVGNNIR 411

Query: 405 SLAPLDTIYSYSYGEPIPYRFSNDAYIAKLL 497
           +    DTI    Y  P+   F N  +IA+LL
Sbjct: 412 NATIDDTIQKMYYSPPVVKAFENICFIAELL 442


>U88175-2|AAB42282.2|  511|Caenorhabditis elegans Uncoordinated
           protein 38 protein.
          Length = 511

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
 Frame = +3

Query: 231 LRELDRIAYRRRPALAISAVDDFLRSEATKTFEDETRRIRADTAALIH--RARSVVPRAK 404
           L+ L ++ + RRP      +DD+      + F+D+ +      A  +H  R  +V    +
Sbjct: 363 LKWLPKLLFMRRP------IDDY-----EEKFDDKKKPKDGKIALSVHAHRVSNVGNNIR 411

Query: 405 SLAPLDTIYSYSYGEPIPYRFSNDAYIAKLL 497
           +    DTI    Y  P+   F N  +IA+LL
Sbjct: 412 NATIDDTIQKMYYSPPVVKAFENICFIAELL 442


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,184,686
Number of Sequences: 27780
Number of extensions: 340310
Number of successful extensions: 1006
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)