Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31109
         (748 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28860.1 68416.m03602 multidrug resistance P-glycoprotein, pu...    30   1.4  
At1g23330.1 68414.m02917 expressed protein                             30   1.9  
At2g21235.1 68415.m02522 bZIP protein-related similar to VirE2-i...    29   4.3  
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha...    29   4.3  
At5g27630.1 68418.m03310 acyl-CoA binding family protein similar...    28   5.7  
At5g13470.1 68418.m01550 expressed protein                             28   5.7  
At1g48560.1 68414.m05430 expressed protein                             28   5.7  
At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family ...    28   7.6  
At5g63420.1 68418.m07962 metallo-beta-lactamase family protein         27   10.0 
At5g20250.2 68418.m02411 raffinose synthase family protein / see...    27   10.0 
At5g20250.1 68418.m02410 raffinose synthase family protein / see...    27   10.0 
At1g31930.2 68414.m03924 extra-large guanine nucleotide binding ...    27   10.0 
At1g31930.1 68414.m03923 extra-large guanine nucleotide binding ...    27   10.0 

>At3g28860.1 68416.m03602 multidrug resistance P-glycoprotein,
           putative similar to mdr-like P-glycoprotein GI:3849833
           from [Arabidopsis thaliana]; contains Pfam profiles
           PF00005: ABC transporter and PF00664: ABC transporter
           transmembrane region; identical to cDNA MDR-like
           p-glycoprotein (At3g28860) GI:24324261
          Length = 1252

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 564 FTGRGNLACVHYSGKKAFSNRRPLYKELSIRDDVNLLSFYAKTG 695
           F+    +AC  YSG++  +  R  Y E  ++ DV      A+TG
Sbjct: 99  FSSYAEIACWMYSGERQVAALRKKYLEAVLKQDVGFFDTDARTG 142


>At1g23330.1 68414.m02917 expressed protein
          Length = 471

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -2

Query: 189 AHQGTSRVELP-TEMSDGKSVQPSRCRWTCRADASCRSHSRIPWLMLVLSFGF 34
           A  GT+R  +   +  DGKS++P      C+          IPWL    +FGF
Sbjct: 206 ALNGTTRTYIDGIQPEDGKSLKPISLLQICKLGVIMYDWIDIPWLKSYYNFGF 258


>At2g21235.1 68415.m02522 bZIP protein-related similar to
           VirE2-interacting protein VIP1 [Arabidopsis thaliana]
           GI:7258340, tbZIP transcription factor [Arabidopsis
           thaliana] GI:17065884
          Length = 550

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 526 STIFPSITSQPRSSLDAATSRACTTPVRRPSPTVGHFTRSSAS 654
           +++ P +   P  S D +    CTT   +PSPT   FT++S S
Sbjct: 32  TSLSPPLIRYPAGSPDFSPGPRCTT---QPSPTFSDFTQASPS 71


>At2g17930.1 68415.m02076 FAT domain-containing protein /
           phosphatidylinositol 3- and 4-kinase family protein
           contains Pfam profiles PF02259 FAT domain, PF00454
           Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
           domain
          Length = 3795

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 592 THARLPRPVNFLADS**KERLWMLSATLRRGTKSLAM 482
           THA LPRP  F      ++ +W  S  L+ G   LA+
Sbjct: 450 THAHLPRPQGFKGMR--EDEVWKASGVLKSGVHCLAL 484


>At5g27630.1 68418.m03310 acyl-CoA binding family protein similar to
           RING finger rngB protein, cytosolic - Dictyostelium
           discoideum, PIR:S68824; contains Pfam profiles PF01344:
           Kelch motif, PF00887: Acyl CoA binding protein (ACBP)
          Length = 648

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 87  CRSHSRIPWLMLVLSFGFHSRRP 19
           C  HS IPW   +LS G H++ P
Sbjct: 245 CAGHSLIPWDNQLLSIGGHTKDP 267


>At5g13470.1 68418.m01550 expressed protein
          Length = 159

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = -3

Query: 674 EQVHVIPDAELLVKWPTVGEGLLTGVVHAREVAAS 570
           E V  +PDA LL++ PT+ +  +TG  HA  VAA+
Sbjct: 48  ESVEKLPDALLLLESPTLAQ--VTGGDHASVVAAA 80


>At1g48560.1 68414.m05430 expressed protein
          Length = 643

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 547 TSQPRSSLDAATSRACTTPVRRP-SPTVGHFTRS 645
           T  PR+S +++T +AC T VRR      GH ++S
Sbjct: 236 TRSPRTSSNSSTMKACETMVRRAVHEDDGHLSKS 269


>At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family
           protein / snRNP family protein contains similarity to
           U4/U6 small nuclear ribonucleoprotein hPrp3 [Homo
           sapiens] gi|2708307|gb|AAC51926
          Length = 786

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +1

Query: 205 GSGSAHPWSSVSWTESLTDAAQHWPSLPSMTSCAPKQPRLSKMRPV 342
           GSG+ +P S V      T  A  + S+PS  S AP Q  L+K+  +
Sbjct: 147 GSGATNPTSGV------TMGASTYSSIPSEASAAPSQTLLTKVSSI 186


>At5g63420.1 68418.m07962 metallo-beta-lactamase family protein 
          Length = 911

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = +1

Query: 499 CPYA-----ASRIASTIFPSITSQPRSSLDAATSRACTTPVRR 612
           CPY      +SRI ST+  S+TS P S     TS +  TP RR
Sbjct: 41  CPYTFTFRQSSRIKSTVSCSVTSAPAS----GTSSSSKTPRRR 79


>At5g20250.2 68418.m02411 raffinose synthase family protein / seed
           imbibition protein, putative (din10) similar to seed
           imbibition protein GB:AAA32975 GI:167100 from [Hordeum
           vulgare]; contains nonconsensus AT donor splice site at
           intron 1; contains Pfam profile PF05691: Raffinose
           synthase or seed imbibition protein Sip1; identical to
           cDNA seed imbibition protein (din10) partial cds
           GI:10834551
          Length = 749

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 3/115 (2%)
 Frame = +3

Query: 300 LRSEATKTFEDE--TRRIRADTAALIHRARSVVPRAKS-LAPLDTIYSYSYGEPIPYRFS 470
           L S   K F D      +  +T AL    ++ V RA     P D +    +   + Y   
Sbjct: 409 LDSSVAKNFPDNGCIACMSHNTDALYCSKQAAVIRASDDFYPRDPVSHTIHIASVAY--- 465

Query: 471 NDAYIAKLLVPLRSVADSIHNLSFYHESAKKFTGRGNLACVHYSGKKAFSNRRPL 635
           N  ++ + + P   +  S+H  + YH SA+  +G G L      GK  F   R L
Sbjct: 466 NSVFLGEFMQPDWDMFHSVHPAAEYHASARAISG-GPLYVSDSPGKHNFELLRKL 519


>At5g20250.1 68418.m02410 raffinose synthase family protein / seed
           imbibition protein, putative (din10) similar to seed
           imbibition protein GB:AAA32975 GI:167100 from [Hordeum
           vulgare]; contains nonconsensus AT donor splice site at
           intron 1; contains Pfam profile PF05691: Raffinose
           synthase or seed imbibition protein Sip1; identical to
           cDNA seed imbibition protein (din10) partial cds
           GI:10834551
          Length = 844

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 3/115 (2%)
 Frame = +3

Query: 300 LRSEATKTFEDE--TRRIRADTAALIHRARSVVPRAKS-LAPLDTIYSYSYGEPIPYRFS 470
           L S   K F D      +  +T AL    ++ V RA     P D +    +   + Y   
Sbjct: 504 LDSSVAKNFPDNGCIACMSHNTDALYCSKQAAVIRASDDFYPRDPVSHTIHIASVAY--- 560

Query: 471 NDAYIAKLLVPLRSVADSIHNLSFYHESAKKFTGRGNLACVHYSGKKAFSNRRPL 635
           N  ++ + + P   +  S+H  + YH SA+  +G G L      GK  F   R L
Sbjct: 561 NSVFLGEFMQPDWDMFHSVHPAAEYHASARAISG-GPLYVSDSPGKHNFELLRKL 614


>At1g31930.2 68414.m03924 extra-large guanine nucleotide binding
           protein, putative / G-protein, putative similar to
           extra-large G-protein (XLG) [Arabidopsis thaliana]
           GI:3201680; contains Pfam profile PF00503: G-protein
           alpha subunit
          Length = 848

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 261 RRPALAISAVDDFLRSEATKTFEDETRRIRADT 359
           RRP +    VDD  R E  +  E+E   + A+T
Sbjct: 120 RRPVVKFKPVDDHDRIEGREAAEEEDNNVEAET 152


>At1g31930.1 68414.m03923 extra-large guanine nucleotide binding
           protein, putative / G-protein, putative similar to
           extra-large G-protein (XLG) [Arabidopsis thaliana]
           GI:3201680; contains Pfam profile PF00503: G-protein
           alpha subunit
          Length = 848

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 261 RRPALAISAVDDFLRSEATKTFEDETRRIRADT 359
           RRP +    VDD  R E  +  E+E   + A+T
Sbjct: 120 RRPVVKFKPVDDHDRIEGREAAEEEDNNVEAET 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,531,159
Number of Sequences: 28952
Number of extensions: 323115
Number of successful extensions: 956
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)