Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31108
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual        27   2.9  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   2.9  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    26   5.0  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   5.0  
SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces...    26   6.6  
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    26   6.6  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    25   8.7  
SPCC1919.09 |tif6||translation initiation factor eIF6|Schizosacc...    25   8.7  
SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces po...    25   8.7  

>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +2

Query: 551 NEGWSFEEVLPYFKKSESFMGKFDAEATKYHSKGGYLSVASDDNMHEIEDLI 706
           N+GW++E  L    +SE  + K D     Y++   YLS   +  +H +ED++
Sbjct: 383 NDGWNWE--LGSVNESEYTVVKVDF----YNNIKSYLSEVKNTEIHSLEDIV 428


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
 Frame = -2

Query: 480 LPPSTLPRGQAHPLF----L*ARQAPSCG 406
           LPPS LPR   HPL       A+Q+PS G
Sbjct: 52  LPPSHLPRSTLHPLLSQQQQPAQQSPSLG 80


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +2

Query: 332 TLATEIPQPYYSNMGTSEDWAYHTEPQEGACRAYKNKGC 448
           T A+  P P   N   S ++  HT+ Q    RA  N  C
Sbjct: 223 TQASTAPNPQEINYQWSHEYRPHTQYQNNLLRAQPNVNC 261


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -2

Query: 159  HCAAKNVVRACWKTGPATW*LLTIVVVNAGSHAQNI 52
            HC A N  ++ W+     W   T  ++  G H  NI
Sbjct: 1673 HCNAFNFAKSHWEPVIEPWTFSTTAIMKDGMHEVNI 1708


>SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 165 IAHCAAKNVVRACWKTGPATW 103
           IAHC+A+  V + +  G ATW
Sbjct: 202 IAHCSAQGKVGSGFDVGAATW 222


>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
 Frame = +2

Query: 359 YYSNMGTSEDWAYHTEPQEGACRAYKNKGCAWPRGKVLGG-SSSINLMFYVRGNKADYDE 535
           Y  N    ED  Y++  + G    Y+N    + RG   GG +   +  +  RG   ++ E
Sbjct: 8   YSGNYNGKED-GYNSRGRYGG--GYRNN---YSRGGGRGGFNDGASYGYDQRGQGRNFYE 61

Query: 536 WAADG----NEGWSFEEVLPY----FKKSESFMGKFDAEATKYHSK 649
               G     + W  E ++P+    +K+ E+   + DAE T+Y  +
Sbjct: 62  SDGPGANLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKE 107


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
 Frame = +2

Query: 506 VRGNKADYDEWAADGNEGW----SFEEVLPYFKKSESFMGKFDAE 628
           V GN AD   W  DG   W     +  VL + KK +S    F A+
Sbjct: 110 VEGNAADPFSWIPDGKNVWDSPPKYIRVLSHNKKEKSLDHLFLAQ 154


>SPCC1919.09 |tif6||translation initiation factor
           eIF6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 363 TVIWGHQKTGLTILNHRKGLVVPTKTRD 446
           T I G +  G     +RKGL+VP+ T D
Sbjct: 51  TTIGGTRIIGRLTCGNRKGLLVPSSTTD 78


>SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 167

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 578 LPYFKKSESFMGKFDAEATKYHSKGGY 658
           +P +  S+ F  KFD E T + +K GY
Sbjct: 1   MPKYNVSD-FKSKFDKELTNHFNKNGY 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,903,527
Number of Sequences: 5004
Number of extensions: 58660
Number of successful extensions: 165
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)