Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31108
(751 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455... 40 0.002
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99... 36 0.026
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 36 0.045
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517... 33 0.24
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 32 0.56
02_05_0304 + 27721413-27721479,27721561-27722208,27722399-277233... 32 0.56
06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219... 31 0.74
03_05_0039 - 20125473-20126222 30 2.3
09_04_0464 + 17820164-17820181,17820972-17821065,17821251-178214... 29 3.9
10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,938... 28 9.1
02_05_1281 - 35439728-35439757,35439758-35439833,35440230-354403... 28 9.1
>04_04_0862 +
28843654-28844386,28844486-28844895,28844995-28845560,
28845737-28845803
Length = 591
Score = 39.9 bits (89), Expect = 0.002
Identities = 50/176 (28%), Positives = 69/176 (39%), Gaps = 4/176 (2%)
Frame = +2
Query: 131 ALTTFLAAQCAI--AGD--HLWPADATDKVLEDPNYDFIXXXXXXXXXXXXNRLSEISDW 298
A T+F+A + AGD + + DA + YD+I LS+ +
Sbjct: 15 AATSFVAMLACVQAAGDESYTFMKDAVQSP-QVSYYDYIIVGGGTAGCPLAATLSQ--RF 71
Query: 299 KVLLVEAGGNPTLATEIPQPYYSNMGTSEDWAYHTEPQEGACRAYKNKGCAWPRGKVLGG 478
+VLL+E GG+P I NM D T P A R G R +VLGG
Sbjct: 72 RVLLLERGGSPYDDERI-----GNMTRFADTLSDTSPSSPAQRFVSEDGVINSRPRVLGG 126
Query: 479 SSSINLMFYVRGNKADYDEWAADGNEGWSFEEVLPYFKKSESFMGKFDAEATKYHS 646
S IN FY R + DE+ GW E ++ E + F E + S
Sbjct: 127 GSCINAGFYTRAS----DEYVR--GLGWDLEATTAAYRWVEDVVA-FQPELGPWQS 175
>03_01_0127 +
988066-988171,988259-988881,988986-989396,989463-990037,
990137-990194
Length = 590
Score = 36.3 bits (80), Expect = 0.026
Identities = 28/80 (35%), Positives = 36/80 (45%)
Frame = +2
Query: 278 LSEISDWKVLLVEAGGNPTLATEIPQPYYSNMGTSEDWAYHTEPQEGACRAYKNKGCAWP 457
LSE S +VLL+E GG P + Y+ D T P+ A R G
Sbjct: 75 LSERS--RVLLLERGGLPYGNRNVSSEYHF-----ADALADTSPRSPAQRFVSEDGVVNA 127
Query: 458 RGKVLGGSSSINLMFYVRGN 517
R +VLGG S +N FY R +
Sbjct: 128 RARVLGGGSCLNAGFYTRAS 147
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 35.5 bits (78), Expect = 0.045
Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Frame = +2
Query: 221 NYDFIXXXXXXXXXXXXNRLSEISDWKVLLVEAGGNPTLATEIPQPYYSNMGTSE---DW 391
+Y++I LSE S +VLL+E GG P Y+NM + + D
Sbjct: 53 SYNYIVIGGGTAGCPLAATLSEHS--RVLLLERGGLP----------YANMSSEQHFTDA 100
Query: 392 AYHTEPQEGACRAYKNKGCAWPRGKVLGGSSSINLMFYVRGN 517
T P A R G R +VLGG S +N FY R +
Sbjct: 101 LADTSPASPAQRFISEDGVVNARARVLGGGSCLNAGFYTRAS 142
>08_02_0598 -
19149218-19149524,19150325-19150896,19151374-19151762,
19151850-19152163,19152312-19152356,19153451-19153805,
19154361-19154430
Length = 683
Score = 33.1 bits (72), Expect = 0.24
Identities = 29/98 (29%), Positives = 42/98 (42%)
Frame = +2
Query: 224 YDFIXXXXXXXXXXXXNRLSEISDWKVLLVEAGGNPTLATEIPQPYYSNMGTSEDWAYHT 403
YD+I LS+ +KVLL+E GG+P I ++ ++D
Sbjct: 50 YDYIIVGGGTAGCPLAATLSQ--KYKVLLLERGGSPYGNRNISHLENFHICLADDSP--N 105
Query: 404 EPQEGACRAYKNKGCAWPRGKVLGGSSSINLMFYVRGN 517
P +G G R KVLGG +S+N FY R +
Sbjct: 106 SPSQGFI---STDGVINARAKVLGGGTSVNAGFYSRAD 140
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 31.9 bits (69), Expect = 0.56
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Frame = +2
Query: 296 WKVLLVEAGGNPTLATEIPQPYYSNMGTSEDWAYHTEPQEGACRAYKNKGCAWPRGKVLG 475
+KVLL+E GG+P + ++G S + P + G R +VLG
Sbjct: 73 YKVLLLERGGSPYGNRNVSYMENFHIGLS-----NMAPDSASQAFISTDGVINARARVLG 127
Query: 476 GSSSINLMFYVRGNKADYDE--WAAD-GNEGWSFEE 574
G + IN FY R + E W D NE + + E
Sbjct: 128 GGTCINAGFYSRASSNFIQEVGWDEDLVNESFPWVE 163
>02_05_0304 +
27721413-27721479,27721561-27722208,27722399-27723371,
27724196-27724237,27724379-27724466,27724911-27725016,
27726499-27726614
Length = 679
Score = 31.9 bits (69), Expect = 0.56
Identities = 29/96 (30%), Positives = 38/96 (39%)
Frame = +2
Query: 224 YDFIXXXXXXXXXXXXNRLSEISDWKVLLVEAGGNPTLATEIPQPYYSNMGTSEDWAYHT 403
YD+I LSE ++VLL+E GG+P + NM D T
Sbjct: 43 YDYIIIGGGTAGCPLAATLSE--RYRVLLLERGGSPYDDARV-----LNMAHFADVLADT 95
Query: 404 EPQEGACRAYKNKGCAWPRGKVLGGSSSINLMFYVR 511
+ R G R +VLGG S IN F+ R
Sbjct: 96 SGASPSQRFVSEDGVINARPRVLGGGSCINAGFFTR 131
>06_03_0980 +
26520832-26520922,26521021-26521409,26521612-26521927,
26522869-26523769,26524103-26524184
Length = 592
Score = 31.5 bits (68), Expect = 0.74
Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 3/130 (2%)
Frame = +2
Query: 191 DATDKVLEDPNYDFIXXXXXXXXXXXXNRLSEISDWKVLLVEAGGNPTLATEIPQPYYSN 370
DA + E+ YD+I L+ +VL++E GG P E P P +
Sbjct: 45 DAAETAAEEA-YDYIVVGGGTAGCPLAATLAGPGGGRVLVLERGGAPA---EFP-PLATA 99
Query: 371 MGTSEDWAYHTEPQEGACRAY---KNKGCAWPRGKVLGGSSSINLMFYVRGNKADYDEWA 541
G A E A G R +VLGG++SIN FY R + D+
Sbjct: 100 GGFVRTLAMADPAPESDAPAQTFASEDGVPNVRARVLGGATSINAGFYSRAH-PDWFRSH 158
Query: 542 ADGNEGWSFE 571
+G E +++
Sbjct: 159 GEGGEAMNWD 168
>03_05_0039 - 20125473-20126222
Length = 249
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 440 KGCAWPRGKVLGGSSSINLMFY 505
+GCA GKVLGGS S+ FY
Sbjct: 223 RGCAKEGGKVLGGSCSLRYDFY 244
>09_04_0464 +
17820164-17820181,17820972-17821065,17821251-17821429,
17821959-17822009,17822683-17822739,17822854-17822974,
17823187-17823253,17823342-17823383,17823629-17823734,
17823864-17823974,17824248-17824319,17824423-17824524,
17824597-17824758,17824961-17825119
Length = 446
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -1
Query: 145 ECSQGLLEDRPRYLVAVDY 89
+C+ GL ED+PRY++ V Y
Sbjct: 231 QCTAGLPEDKPRYVMGVGY 249
>10_06_0002 +
9382559-9382937,9383008-9383180,9386752-9386901,
9387180-9387325,9387416-9387572,9387720-9387778,
9388204-9388360,9389001-9389150,9389280-9389416,
9390071-9390217,9390292-9390393,9390742-9390799,
9391997-9392034,9392124-9392250,9392320-9392493,
9393125-9393256,9393940-9394049,9394752-9394812,
9395036-9395213,9395326-9395531,9395796-9395915,
9396496-9396594,9396983-9397204,9397482-9397621,
9397741-9397852,9398021-9398071,9398151-9398240,
9398397-9398567,9398663-9398815,9399774-9399950,
9400045-9400182,9400295-9400365,9400739-9400838,
9401324-9401380,9401469-9401525,9401619-9401699,
9401782-9401864,9401975-9402110
Length = 1632
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +2
Query: 422 CRAYKNKGCAWPRGKVLGGSSSINLMFYVRGNKADYDEWAADGNEGWSFEEVL 580
CRA C+ P G + ++M Y +G+K W + EGW EV+
Sbjct: 120 CRAGGEVFCSAPLLFFTGSAPGFSVMSYRKGSKV----WVEEKGEGWVEAEVV 168
>02_05_1281 -
35439728-35439757,35439758-35439833,35440230-35440345,
35441867-35441928,35441947-35442112
Length = 149
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 469 ARRKQQHQFDVLRSG*QGRLRRMGCRWKRRL 561
A+RK+QH+FD+ + + +R + CR+ L
Sbjct: 8 AKRKKQHEFDLQSTTDRSYIRLLPCRFSSHL 38
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,095,464
Number of Sequences: 37544
Number of extensions: 435979
Number of successful extensions: 1115
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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