Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31108
         (751 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59581| Best HMM Match : No HMM Matches (HMM E-Value=.)              97   1e-20
SB_9124| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_14978| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_59581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 97.5 bits (232), Expect = 1e-20
 Identities = 51/129 (39%), Positives = 72/129 (55%), Gaps = 2/129 (1%)
 Frame = +2

Query: 224 YDFIXXXXXXXXXXXXNRLSEISDWKVLLVEAGGNP-TLATEIPQPYYSNMGTSE-DWAY 397
           +D++            NRLS   D KVLL+EAG    T    +P     N+   + +W Y
Sbjct: 164 HDYVICGAGSAGCVLANRLSADPDSKVLLLEAGPKDRTWKIHMPAALIYNLCDDKYNWYY 223

Query: 398 HTEPQEGACRAYKNKGCAWPRGKVLGGSSSINLMFYVRGNKADYDEWAADGNEGWSFEEV 577
           HT PQ    +   N+    PRG+V GGSSS+N M Y+RG+  DYD W  +G +GWS+ + 
Sbjct: 224 HTAPQ----KHMNNRVMYCPRGRVWGGSSSLNAMVYIRGHAYDYDRWEREGAQGWSYADC 279

Query: 578 LPYFKKSES 604
           LPYF+KS++
Sbjct: 280 LPYFRKSQT 288


>SB_9124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +3

Query: 174 ITYGQPMLPTRFSKI----QTMTSSSSELVPPDRLSPIVLAKYLTGKC 305
           +TY  P LPT F KI     T+TSS+++    D    I+L K     C
Sbjct: 141 VTYYNPDLPTHFLKITQAESTVTSSTTQSDDDDEEDQIILKKTSFSVC 188


>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3669

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = +2

Query: 530  DEWAADGNEGWSFEEVLPYFKKSESFMGKFDAEATKYHSKG-GYL--SVASDDNMHEIED 700
            D +AADGN+G  F+++L    K +  +G  D +  +   +G  YL       D  ++ ED
Sbjct: 1970 DNFAADGNKG--FDDLLQIVDKLDE-LGAVDGQLKRKLKEGRNYLKGDYKQTDRYYDTED 2026

Query: 701  LIIKAAVELGLKNLTDC 751
             ++++    GL     C
Sbjct: 2027 GLLRSTRGQGLMRQDGC 2043



 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/62 (24%), Positives = 26/62 (41%)
 Frame = +2

Query: 416  GACRAYKNKGCAWPRGKVLGGSSSINLMFYVRGNKADYDEWAADGNEGWSFEEVLPYFKK 595
            G  + +K+ GC+W +    G SS +N+      + A   EW           E + Y+  
Sbjct: 1332 GLTKNWKSNGCSWIKTLQTGPSSPVNVKGQAESSIAIRIEWDKPLQPNGIITEYIIYYGP 1391

Query: 596  SE 601
            +E
Sbjct: 1392 AE 1393


>SB_14978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +2

Query: 209 LEDP--NYDFIXXXXXXXXXXXXNRLSEISDWKVLLVEAGGNP-TLATEIPQPYYSNMGT 379
           LEDP  +YDFI            NRL+     +VL++EAG    ++   IP   +S +  
Sbjct: 4   LEDPLGDYDFIIAGGGTAGCILANRLTADGRHRVLMLEAGHEARSMWISIPAG-FSKLLV 62

Query: 380 SEDW 391
           + DW
Sbjct: 63  NPDW 66


>SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -3

Query: 572 PRNSSLRFHRQPIRRNRPCYPERKTSN 492
           PR+SS  F +QPI R   C PE KT++
Sbjct: 565 PRDSSDEF-KQPITRQLECKPEVKTAH 590


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,368,706
Number of Sequences: 59808
Number of extensions: 466322
Number of successful extensions: 1370
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1356
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)