Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31106
(578 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom... 28 1.1
SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces... 27 2.6
SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces... 26 3.5
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos... 26 4.6
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 25 6.1
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 25 6.1
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc... 25 8.0
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc... 25 8.0
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 25 8.0
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 25 8.0
>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 27.9 bits (59), Expect = 1.1
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 51 ALAVGVNALTEEQKAEITKSSLPLIAECSKEFSVNQGDIDAAKKLGD 191
A G N +T KA I + + L EC+KE + DI+ +++ D
Sbjct: 200 ARQTGKNNITVVHKATIMRMADGLFLECAKELAPEYPDIELREEILD 246
>SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 160
Score = 26.6 bits (56), Expect = 2.6
Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = +2
Query: 341 NGRCALQKMTNQ-SVTVTRAAKEQNFSSTVSLQTKE 445
+G A+Q+ +N+ S+TV A K ++FSS+V+ Q E
Sbjct: 93 SGGFAVQQPSNELSITVPEAYKLEDFSSSVANQLLE 128
>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 446
Score = 26.2 bits (55), Expect = 3.5
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -2
Query: 340 SFSKAFKSSSLVRYFLLFS-IVAATSKR 260
SFS+ F S+ +RYFL +S VA S R
Sbjct: 362 SFSEYFAKSTFIRYFLGYSGYVAGLSSR 389
>SPAC664.03 |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 457
Score = 25.8 bits (54), Expect = 4.6
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -2
Query: 229 MKHPTKQEFKPLGSPSFLAASMSP*FTLNSLEHSAIRGNDD 107
+KHPTK + KP+ A ++ P ++ ++H +R DD
Sbjct: 176 LKHPTKPDLKPVS-----AWNLLPNTSMAGIQHLMLRVADD 211
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.4 bits (53), Expect = 6.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 384 VTDWFVIFWSAHLPLVSRRLSSPPRW*DISCSSQ 283
+ +WF IFW VSR S+P + D S Q
Sbjct: 160 LVEWFNIFWDVFSARVSRVNSTPIQLYDPSTQRQ 193
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 25.4 bits (53), Expect = 6.1
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -2
Query: 355 RTSPVSF--SKAFKSSSLVRYFLLFSIVAATSKRPLALMIPAF 233
RT+ +SF A+K SL + L SIV+A + P+ + A+
Sbjct: 817 RTAVISFFIQTAYKCLSLQNFSTLMSIVSALNSAPIYRLHAAY 859
>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 615
Score = 25.0 bits (52), Expect = 8.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 463 VRRPRNFLCLQRNSRGEVLLFRS 395
VR+P +F+C N RG L + +
Sbjct: 354 VRKPSSFICTISNDRGSELTYNN 376
>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 593
Score = 25.0 bits (52), Expect = 8.0
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 202 KPLGSPSFLAASMSP*FTLNSLEHSAIRGNDD 107
KP SF A+ M+P +L S +SAI G +D
Sbjct: 477 KPSVLASFNASIMNPKSSLPSFSNSAILGTND 508
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.0 bits (52), Expect = 8.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 242 NHQRKWSFRCSRYY*EEQEISYQRGGL 322
+H R +R SR Y QEISY G L
Sbjct: 240 SHPRGIHWRDSRSYLLSQEISYSNGNL 266
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 8.0
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -2
Query: 343 VSFSKAFKSSSLVRYFLLFSIVAATSKRPLALMIPAFFMK 224
V+ + A S+S F L+++ +TSK +++IP F K
Sbjct: 129 VTDTPASDSASSQDRFTLYALSPSTSKEGSSILIPTFVSK 168
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,186,066
Number of Sequences: 5004
Number of extensions: 43147
Number of successful extensions: 139
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -