Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31106
         (578 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39767| Best HMM Match : CBAH (HMM E-Value=0.86)                     32   0.39 
SB_1431| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.90 
SB_30776| Best HMM Match : HLH (HMM E-Value=1.7e-13)                   28   4.8  
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_33834| Best HMM Match : PAN (HMM E-Value=0.00029)                   28   6.3  

>SB_39767| Best HMM Match : CBAH (HMM E-Value=0.86)
          Length = 1182

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -2

Query: 361 LERTSPVSFSKAFKSSSLVRYFLLFSIVAATSKRPLALMIPAFFMKHPT 215
           LER  P+ F KA ++SSL+ +FLL +    +S     L+ P      PT
Sbjct: 592 LERVVPLLFLKALETSSLIEFFLLSAKTTVSSCLATLLVRPLKTTPAPT 640


>SB_1431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1748

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = -1

Query: 278 SGYIEKTTCVDDSSFLHETSYKARVQTARVTKFLSRVNVALIHAELFG 135
           + YI++     +  +  ++ YKA+ +   + +FLSR N+AL  A+ FG
Sbjct: 562 ASYIDQLERSQNLQYQGKSLYKAKNKQRTLKEFLSRANLALWFAKAFG 609


>SB_30776| Best HMM Match : HLH (HMM E-Value=1.7e-13)
          Length = 1217

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +2

Query: 308 QRGGLESLRETNGRCALQKMTNQSVTVTRAAKEQNF---SSTVSLQTKEVSRS 457
           Q G  +  +ET G  ALQ+  NQ+VT+T +  E      +ST   QT+E + S
Sbjct: 204 QLGEQDDSKETIGS-ALQQTDNQNVTITTSNNESPIVMPTSTAQNQTQEENTS 255


>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4856

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 6   HVKMSANSFVVLAFCALAVGVNALTEEQKAEITK 107
           H  ++ N+ +V+A   +   VNA  ++ KAEI K
Sbjct: 54  HASLTGNTEIVMALLDMQCNVNARDKKGKAEIAK 87


>SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2496

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 14/89 (15%)
 Frame = +2

Query: 212  LCRMFHEESWNHQRKWSFRC-----------SRYY*EEQEISYQRGGLESLRETNGRC-- 352
            LCRM    +W H   W  RC           S  Y   + +     GL S+  ++     
Sbjct: 1454 LCRMVFSLAWRHDVTWYPRCHDIVMSHGTPLSSQYDVTRYLFQDWSGLSSMMVSSRASKL 1513

Query: 353  -ALQKMTNQSVTVTRAAKEQNFSSTVSLQ 436
             ++QK+T     +    KE+NF  T +L+
Sbjct: 1514 QSIQKITEMQEFLEFVVKEENFCGTGALE 1542


>SB_33834| Best HMM Match : PAN (HMM E-Value=0.00029)
          Length = 198

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 307 VRYFLLFSIVAATSKRPLALMIPAFFMKHPTK 212
           +RY ++  I+  TSKR  AL I  +F + P K
Sbjct: 156 IRYKIISQILKETSKRNTALKILKYFSQFPLK 187


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,984,009
Number of Sequences: 59808
Number of extensions: 310893
Number of successful extensions: 817
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)