Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31106
(578 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82076-2|CAB04938.1| 360|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z75526-7|CAE17729.1| 325|Caenorhabditis elegans Hypothetical pr... 27 7.3
U41550-1|AAA83284.1| 1057|Caenorhabditis elegans Hypothetical pr... 27 7.3
U00048-1|AAB53825.2| 425|Caenorhabditis elegans Lethal protein ... 27 7.3
AJ010553-1|CAA09234.1| 425|Caenorhabditis elegans LET-756 prote... 27 7.3
AF047662-5|AAC04440.1| 385|Caenorhabditis elegans Hypothetical ... 27 7.3
Z78198-3|CAB01569.1| 1010|Caenorhabditis elegans Hypothetical pr... 27 9.6
U67956-5|AAB07694.1| 724|Caenorhabditis elegans Mechanosensory ... 27 9.6
L25312-1|AAA17404.1| 724|Caenorhabditis elegans mec-10 degeneri... 27 9.6
>Z82076-2|CAB04938.1| 360|Caenorhabditis elegans Hypothetical
protein W07G1.6 protein.
Length = 360
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 447 TSFVCNETVEEKFCSFAALVTVTDWFVIFWSAHLPLVSRR 328
T F C ++ F AA+ +V +W + F+ H+P V RR
Sbjct: 288 TIFECLVSLNPLFIVPAAMFSVPEWKIAFYK-HMPFVGRR 326
>Z75526-7|CAE17729.1| 325|Caenorhabditis elegans Hypothetical
protein C06H2.7 protein.
Length = 325
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 93 AEITKSSLPLIAECSKEFSVNQGDI 167
A +T +SLPLI EC E+ ++ +I
Sbjct: 239 ASVTAASLPLIVECINEWRASRREI 263
>U41550-1|AAA83284.1| 1057|Caenorhabditis elegans Hypothetical
protein R04A9.2 protein.
Length = 1057
Score = 27.5 bits (58), Expect = 7.3
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = +3
Query: 63 GVNALTEEQKAEITKSSLPLIAEC--SKEFSVNQGDIDAAK--KLGDPSGLNSCFVGCFM 230
G NALT E ++E+T+ + +C +++F + K + P + G F+
Sbjct: 244 GPNALTLENRSELTRIIEAITDQCLHNEKFLLYSSGTFPTKGGDIASPDEVTLIKSG-FV 302
Query: 231 KKAGIINASGLFDVAATIEKSKKYLTSEEDLKAF 332
K I++ G+ D T++ +K + L F
Sbjct: 303 KTTKIVDRDGVPDAIMTVDTTKSPFYKDTSLLKF 336
>U00048-1|AAB53825.2| 425|Caenorhabditis elegans Lethal protein 756
protein.
Length = 425
Score = 27.5 bits (58), Expect = 7.3
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +2
Query: 218 RMFHEESWNHQRKWSFRCSRYY*EEQEISYQRGGLESLRETNGRCALQKMTNQSV-TVTR 394
R+ E+ ++K R R EEQ +R L+SLRE R Q+ Q T TR
Sbjct: 275 RLLEEKKRRREKKKRRREDRLRKEEQIREARRQELKSLREEELRRRYQQQQQQQASTQTR 334
Query: 395 AAKEQN 412
+ QN
Sbjct: 335 YNRPQN 340
>AJ010553-1|CAA09234.1| 425|Caenorhabditis elegans LET-756 protein
protein.
Length = 425
Score = 27.5 bits (58), Expect = 7.3
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +2
Query: 218 RMFHEESWNHQRKWSFRCSRYY*EEQEISYQRGGLESLRETNGRCALQKMTNQSV-TVTR 394
R+ E+ ++K R R EEQ +R L+SLRE R Q+ Q T TR
Sbjct: 275 RLLEEKKRRREKKKRRREDRLRKEEQIREARRQELKSLREEELRRRYQQQQQQQASTQTR 334
Query: 395 AAKEQN 412
+ QN
Sbjct: 335 YNRPQN 340
>AF047662-5|AAC04440.1| 385|Caenorhabditis elegans Hypothetical
protein T22B2.3 protein.
Length = 385
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 553 FYFYSTNAIKK*LLRYYQVIIETSQALFFKVRRPRNFLC 437
FY + N IK LL + +I+ + Q LFF + FLC
Sbjct: 282 FYPFLKNIIKFFLLSVFCLILFSMQTLFFPNQNHEFFLC 320
>Z78198-3|CAB01569.1| 1010|Caenorhabditis elegans Hypothetical
protein F55C5.4 protein.
Length = 1010
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 364 FLERTSPVSFSKAFKSSSLVRYFLLFSIVAATSK 263
F +R S + + ++ +F+LFSIV+A+SK
Sbjct: 840 FHKRVSETDYWDEDSAKRMMHHFMLFSIVSASSK 873
>U67956-5|AAB07694.1| 724|Caenorhabditis elegans Mechanosensory
abnormality protein10 protein.
Length = 724
Score = 27.1 bits (57), Expect = 9.6
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +3
Query: 66 VNALTEEQKAEITKSSLPLIAECSKEFSVNQGDIDAAKKL-GDPSGLNSCFV 218
++AL+EEQ+ ++++ LI +CS F+ DID +L DP+ +CFV
Sbjct: 388 MSALSEEQRILMSQAKHNLIHKCS--FNGKPCDIDQDFELVADPT-FGNCFV 436
>L25312-1|AAA17404.1| 724|Caenorhabditis elegans mec-10 degenerin
protein.
Length = 724
Score = 27.1 bits (57), Expect = 9.6
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +3
Query: 66 VNALTEEQKAEITKSSLPLIAECSKEFSVNQGDIDAAKKL-GDPSGLNSCFV 218
++AL+EEQ+ ++++ LI +CS F+ DID +L DP+ +CFV
Sbjct: 388 MSALSEEQRILMSQAKHNLIHKCS--FNGKPCDIDQDFELVADPT-FGNCFV 436
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,146,334
Number of Sequences: 27780
Number of extensions: 240859
Number of successful extensions: 686
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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