Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31106
         (578 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g63200.1 68416.m07100 patatin-related low similarity to patat...    32   0.32 
At2g25270.1 68415.m03023 expressed protein                             29   3.0  
At2g04039.1 68415.m00383 expressed protein                             28   3.9  
At4g26120.1 68417.m03760 ankyrin repeat family protein / BTB/POZ...    28   5.2  
At5g40530.2 68418.m04918 expressed protein contains Pfam profile...    27   6.8  
At5g40530.1 68418.m04919 expressed protein contains Pfam profile...    27   6.8  
At3g21250.1 68416.m02685 ABC transporter family protein similar ...    27   6.8  
At5g58660.1 68418.m07350 oxidoreductase, 2OG-Fe(II) oxygenase fa...    27   9.0  
At5g03000.1 68418.m00245 kelch repeat-containing F-box family pr...    27   9.0  
At4g28660.1 68417.m04096 photosystem II reaction centre W (PsbW)...    27   9.0  
At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein ...    27   9.0  

>At3g63200.1 68416.m07100 patatin-related low similarity to
           patatin-like latex protein allergen Hev b 7 - Hevea
           brasiliensis, EMBL:AF113546; contains patatin domain
           PF01734
          Length = 384

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = -2

Query: 430 RNSRGEVLLFRSPCHCH*LVCHFLERTSPVSFSKAFKSSSLVRYFLLFSIVAATSKRP 257
           R   G+VL  +  C    + C+ L+ ++P  FS+A  S S    F L+ +  ATS  P
Sbjct: 143 RREDGKVLTMKDTCKPLLVPCYDLKTSAPFVFSRAGASESPSFDFELWKVCRATSATP 200


>At2g25270.1 68415.m03023 expressed protein
          Length = 545

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 373 VCHFLERTSPVSFSKAFKSSSLVRYFLLFSIVA 275
           +CH   RT+ V +SK     SL+ + L+F+++A
Sbjct: 131 MCHICHRTNSVGYSKVAYVVSLI-FLLIFTVIA 162


>At2g04039.1 68415.m00383 expressed protein
          Length = 199

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 347 RCALQKMTNQSVTVTRAAKEQNFSSTVSLQTKE 445
           RCALQ+ +  +V   +  KE+   STV++  K+
Sbjct: 45  RCALQESSTSAVATEKKNKEEGEESTVAVPAKK 77


>At4g26120.1 68417.m03760 ankyrin repeat family protein / BTB/POZ
           domain-containing protein contains Pfam domain, PF00023:
           Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
          Length = 600

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 347 RCALQKMTNQSVTVTRAAKEQNFSSTVSLQTKEVSR 454
           RC L        +     KEQ  S+TV LQ KE++R
Sbjct: 83  RCILSARIPVFKSALATVKEQKSSTTVKLQLKEIAR 118


>At5g40530.2 68418.m04918 expressed protein contains Pfam profile
           PF05148: Protein of unknown function (DUF691)
          Length = 301

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +3

Query: 6   HVKMSANSFVVLAFCALAVGVN--ALTEEQKAEITKSSLPLIAECSKEFSVNQGDID 170
           +  + ++S  V  FC   +G N  +  +E    +  S + LIAE    F  N G  D
Sbjct: 175 NTSLESSSVDVAVFCLSLMGTNYSSYIKEAHRVLRPSGMLLIAEVKSRFDPNNGGAD 231


>At5g40530.1 68418.m04919 expressed protein contains Pfam profile
           PF05148: Protein of unknown function (DUF691)
          Length = 287

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +3

Query: 6   HVKMSANSFVVLAFCALAVGVN--ALTEEQKAEITKSSLPLIAECSKEFSVNQGDID 170
           +  + ++S  V  FC   +G N  +  +E    +  S + LIAE    F  N G  D
Sbjct: 175 NTSLESSSVDVAVFCLSLMGTNYSSYIKEAHRVLRPSGMLLIAEVKSRFDPNNGGAD 231


>At3g21250.1 68416.m02685 ABC transporter family protein similar to
           MRP-like ABC transporter GB:AAC49791 from [Arabidopsis
           thaliana]
          Length = 1294

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 213 FVGCFMKKAGIINASGLFDVAATI 284
           F+GC + K+  +NAS +F V AT+
Sbjct: 363 FLGCALLKSAPLNASTIFTVLATL 386


>At5g58660.1 68418.m07350 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to ACC oxidase, Lycopersicon
           esculentum [SP|P05116], gibberellin 3B-hydroxylase,
           Latuca sativa [gi:4164145]; contains Pfam domain
           PF03171, 2OG-Fe(II) oxygenase superfamily
          Length = 352

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 1/103 (0%)
 Frame = -1

Query: 452 EKLPLFATKQSRRSFALSQPXXXXXXXXXXXGAHISR*-FLEGFQVLLAGKIFLALLNSS 276
           +K  LFA  +S  S+    P           GA  S    LEGF V L+       L+S 
Sbjct: 86  KKRELFAAVKSPLSYFWGTPALNRSGDALKRGAQASNLTMLEGFNVPLSS------LSSL 139

Query: 275 GYIEKTTCVDDSSFLHETSYKARVQTARVTKFLSRVNVALIHA 147
             +  +TC DD +         RV      K ++R+ V+L  A
Sbjct: 140 SKLPTSTCCDDDAQEEPKLESFRVLMEEYGKHITRIAVSLFEA 182


>At5g03000.1 68418.m00245 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 354

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -2

Query: 322 KSSSLVRYFLLFSIVAATSKRPLALMIPAFFMKHPTKQEFKPLGSPSFL 176
           K++   R+F L  I      +P+   IP+F  +HPT   F  +GS  ++
Sbjct: 101 KNNPNPRWFTLAPIPKEQKVKPI---IPSFPYQHPTSSTFVSIGSEIYI 146


>At4g28660.1 68417.m04096 photosystem II reaction centre W (PsbW)
           family protein contains Pfam profile: PF03912
           photosystem II reaction centre W protein, PsbW
          Length = 183

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = -3

Query: 237 LSS*NILQSKSSNRSGHQVS*PRQCRPDSR*TLWSI-PLLEAMMISLSRPFV 85
           LSS ++L  KSS+ +G  VS PR  +P SR  L  + P+   MM+  +  F+
Sbjct: 27  LSSCSVLPIKSSSFTGSPVSLPR-AQPSSRTALRPMKPVSITMMVKPALQFI 77


>At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein
           contains Pfam PF00096: Zinc finger, C2H2 type
          Length = 387

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 307 PARRT*KPSRN*REMCAPENDKPVSDSDKGCERA 408
           PA +  +  +    +C P +D+P +   +GCE+A
Sbjct: 207 PAEKVLRTVKTPATVCGPSSDRPYACPYEGCEKA 240


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,251,196
Number of Sequences: 28952
Number of extensions: 220169
Number of successful extensions: 608
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)