Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31103
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr 1|||Ma...    57   2e-09
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    28   1.1  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    28   1.4  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   2.4  
SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos...    27   2.4  
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    27   3.2  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    26   4.2  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    26   5.6  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   7.4  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    25   9.8  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   9.8  
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    25   9.8  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    25   9.8  

>SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 120

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
 Frame = +2

Query: 296 PSRSLYGFFLYLFSKTTLTMFCIWAFTPDSFLHYFNIYYYPQKYWSTALPIQFLVALTVF 475
           P+   YGF +YL S     ++ +WA TP   L +F I+YY  ++W+ A+P  +L  L ++
Sbjct: 5   PTYEYYGFVMYLVSMLGFGVYIVWALTPAPVLKFFEIHYYLSRWWALAIP-TWLFVLVIY 63

Query: 476 AFLIYPSINM-ILTPHIDSPNTFQDKFS 556
             ++  + N  +LT    S     D+++
Sbjct: 64  IHVVLNAYNTEVLTKPFSSLECIVDQYA 91


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = +2

Query: 284 PAPTPSRSLYGFFLYLFSKTTLTMFCIWAFTPDSFLHYFNIYYYPQKYWSTALPIQFLVA 463
           PA T S  LY FF  L S+     + +W + P S +H+  +Y  P+K      P   L A
Sbjct: 690 PALT-SEWLY-FFDQLHSQCYKGNYELWRYIPYSIIHFHYLYATPEKCRLPHPPRSDLEA 747

Query: 464 LTVF 475
           L ++
Sbjct: 748 LKLY 751


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +2

Query: 278 HTPAPTPSRSLYGFFLYLFSKTTLTMFCIWAFTPDSFLHYFNI 406
           HT A T    + GF L+L S+T L     WAF   S    F +
Sbjct: 81  HTKAVTKGLKI-GFMLFLISETFLFASIFWAFFHSSLSPTFEL 122


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 360 VFGLLHQIVFYIILTFITIHKNTGPQHYQYNFW 458
           VFGL++ I+ +++  +  I++   PQH     W
Sbjct: 657 VFGLIYFIIGFLVYKYELIYQMEHPQHSTGELW 689


>SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -1

Query: 435 VDQYFCG***MLK*CRKLSGVKAQIQNIVRVVLLNKYRKKPYKDLDGV 292
           +DQ FC     +K CR+      +++  V +V  +  R++ Y DL+G+
Sbjct: 47  IDQIFCS---SMKRCRETIAPYLELKPEVPIVYTDLIRERVYGDLEGM 91


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 290 PTPSRSLYGFFLY-LFSKTTLTMFCIWAFTPDSFLHY 397
           PT    LYG  L  L SKTT ++  I A+ P   +HY
Sbjct: 122 PTLENILYGSNLSSLLSKTTHSILDILAWVPYGVMHY 158


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 510 LLHILIVQTLFKISFLILQVKQMIKLFPQMVVFVRIVI 623
           L+H+L  ++LFK S  +++ +  +   PQM+  V  V+
Sbjct: 169 LVHLLFFKSLFKFSTNLVKFQWFLVPEPQMLQLVNSVV 206


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 125 LYVHHFLLIPCQHLVHR 75
           L+   F+L PCQH  HR
Sbjct: 844 LFSEPFVLFPCQHAFHR 860


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -1

Query: 237  VFVIRSIFFRIAFTATLRRFKSKLLNSM*RTLD 139
            + V   + F+  ++A+LRR +SKL+ S+   L+
Sbjct: 1007 LLVTEILEFQALYSASLRRMRSKLIKSLLHLLE 1039


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1147

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 211  KKYTSYHKNCGKLSNKITSNA*THTST 291
            KK+T YHK    +S+K+ S   T   T
Sbjct: 1035 KKFTDYHKFLENISDKLKSEEDTSLET 1061


>SPAC6C3.06c |||P-type ATPase, calcium
            transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 592  GKSFIICFTCKIRKLILKSVWTINMWSK 509
            GK   +CF+C I   ++     IN W +
Sbjct: 937  GKMLAVCFSCLIFNELIMVALQINTWEQ 964


>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 59  NASLVYDVLNVDKELKGSGVHREFQLKSNVLYIEFKSLDLKRL 187
           N  LV DVL+    +K SG  RE        Y++ KSL +  L
Sbjct: 456 NTGLVSDVLSPFGGVKESGFGREGSKYGISEYLDIKSLTISTL 498


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +2

Query: 392 HYFNI-YYYPQKYWSTAL---PIQFLVALTVFAFLIYPSINMILTPHIDSPNTFQDKFSD 559
           H FN  + Y Q Y++ +L   P    V  T F  L +     + TP ID+P+  + KFSD
Sbjct: 256 HIFNQRHQYLQNYYTASLTNIPTISNVNATNFHPL-HSQQPYVDTPGIDAPSDLEAKFSD 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,811,014
Number of Sequences: 5004
Number of extensions: 60615
Number of successful extensions: 174
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)