Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31103
(666 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0449 - 24437994-24438157,24438265-24438383,24438489-24438760 64 1e-10
08_02_1388 + 26649874-26649905,26650243-26650365,26650980-266510... 52 5e-07
02_02_0595 + 11968298-11968329,11969405-11969438,11970216-119703... 52 5e-07
10_08_0985 - 22042801-22042963,22043019-22043138,22043261-220435... 49 3e-06
04_04_0436 + 25186144-25187915,25188020-25188077,25188472-25188888 31 0.62
01_03_0248 + 14235808-14235989,14236538-14236635,14237171-142372... 31 0.62
12_02_0387 + 18453328-18453456,18453699-18453836,18454085-184541... 28 5.8
07_03_1541 + 27575006-27575089,27575361-27575460,27575643-275757... 28 5.8
>03_05_0449 - 24437994-24438157,24438265-24438383,24438489-24438760
Length = 184
Score = 63.7 bits (148), Expect = 1e-10
Identities = 27/83 (32%), Positives = 45/83 (54%)
Frame = +2
Query: 308 LYGFFLYLFSKTTLTMFCIWAFTPDSFLHYFNIYYYPQKYWSTALPIQFLVALTVFAFLI 487
+YGF + + T++ +WA+ P+ L I YYP +YW+ A+P F++ T ++
Sbjct: 53 VYGFVGSITTVIATTVYLVWAYMPERCLRSLGITYYPSRYWALAVP-SFVIVATALCMVV 111
Query: 488 YPSINMILTPHIDSPNTFQDKFS 556
Y N + TP S NT D++S
Sbjct: 112 YVGFNFLATPPPTSFNTIFDEYS 134
>08_02_1388 +
26649874-26649905,26650243-26650365,26650980-26651013,
26651792-26651893,26652174-26652241,26652518-26652571,
26653139-26653211,26653428-26653537,26653615-26653719,
26653842-26653941,26653979-26654088,26656234-26656306,
26656429-26656484,26656576-26656702
Length = 388
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/74 (33%), Positives = 42/74 (56%)
Frame = +2
Query: 23 QKTLKFSFTSNDNASLVYDVLNVDKELKGSGVHREFQLKSNVLYIEFKSLDLKRLRVAVN 202
Q + + S + AS+VY L VDKEL+ V RE + L + F++++ + LR + +
Sbjct: 303 QSDFEIDYGSEERASIVYKTLAVDKELQPDKVKREMSVSGGKLVVHFEAVEARFLRASFS 362
Query: 203 AILKNILLITKTVE 244
A + +L+TK VE
Sbjct: 363 AFVDLTVLVTKLVE 376
>02_02_0595 +
11968298-11968329,11969405-11969438,11970216-11970317,
11970598-11970665,11970942-11970995,11971563-11971635,
11971852-11971961,11972039-11972143,11972266-11972365,
11972403-11972512,11974664-11974736,11974859-11974914,
11975006-11975132
Length = 347
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/74 (33%), Positives = 42/74 (56%)
Frame = +2
Query: 23 QKTLKFSFTSNDNASLVYDVLNVDKELKGSGVHREFQLKSNVLYIEFKSLDLKRLRVAVN 202
Q + + S + AS+VY L VDKEL+ V RE + L + F++++ + LR + +
Sbjct: 262 QSDFEIDYGSEERASIVYKTLAVDKELQPDKVKREMSVSGGKLVVHFEAVEARFLRASFS 321
Query: 203 AILKNILLITKTVE 244
A + +L+TK VE
Sbjct: 322 AFVDLTVLVTKLVE 335
>10_08_0985 -
22042801-22042963,22043019-22043138,22043261-22043562,
22044055-22044351,22044448-22044556,22044826-22045358,
22045446-22045644,22045741-22045865,22045937-22046020,
22046093-22046221,22046337-22046465,22046593-22046739,
22047106-22047346,22047859-22047980
Length = 899
Score = 49.2 bits (112), Expect = 3e-06
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Frame = +2
Query: 284 PAPTPSRS---LYGFFLYLFSKTTLTMFCIWAFTPDSFLHYFNIYYYPQKYWSTALPIQF 454
P PSR YGF + + + WA+ P+ +L + + YYP ++W+ A+P
Sbjct: 757 PTADPSRGSSEAYGFVGSIAAVAAAAAYLAWAYLPEPWLRFLGVTYYPARHWALAMP-SL 815
Query: 455 LVALTVFAFLIYPSINMILTP 517
L+ ++Y + N +L P
Sbjct: 816 LLEAAAQGMVLYMASNFLLAP 836
>04_04_0436 + 25186144-25187915,25188020-25188077,25188472-25188888
Length = 748
Score = 31.5 bits (68), Expect = 0.62
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +2
Query: 11 QYYLQKTLKFSFTSNDNASLVYDVLNVDKELKGSGVHREFQLKS 142
Q + T + FT SL Y+V + KEL+ REF LKS
Sbjct: 84 QKLIDATARLEFTHKQCGSLQYEVRILQKELEIRNKEREFDLKS 127
>01_03_0248 +
14235808-14235989,14236538-14236635,14237171-14237204,
14237731-14237900,14238060-14238240,14238288-14238498,
14239122-14239233,14239360-14239487,14240201-14240263
Length = 392
Score = 31.5 bits (68), Expect = 0.62
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 14 YYLQKTLKFSFTSNDNASLVYDVLNVDKELKGSGVH 121
Y+L++ +F T N N S + V+N +KG+G+H
Sbjct: 131 YFLKELYRFEDTDNPNKSAIPLVINTSGWVKGTGLH 166
>12_02_0387 +
18453328-18453456,18453699-18453836,18454085-18454144,
18461532-18462591,18463022-18463521
Length = 628
Score = 28.3 bits (60), Expect = 5.8
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 12/104 (11%)
Frame = +2
Query: 23 QKTLKFSFTSNDNA---SLVYDVLNVD---KELKGSGVHREFQLKSNVLYIEFKS----- 169
Q L +F S +N +++DV+++ + G +F+ S+ Y++ K
Sbjct: 504 QALLLIAFGSGENRREEQILFDVVDIPYNYNAIFGRATLNKFEAISHHNYLKLKMPGPTG 563
Query: 170 -LDLKRLRVAVNAILKNILLITKTVENLATK*PAMPEHTPAPTP 298
+ +K L+ + A ++ +I + V ++ T+ P+HTP PTP
Sbjct: 564 VIVVKGLQ-PLAASKGDLAMINRAVHSVETRPYERPKHTPKPTP 606
>07_03_1541 +
27575006-27575089,27575361-27575460,27575643-27575782,
27575948-27576163
Length = 179
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +2
Query: 77 DVLNVDKELKGSGVHREFQLKSNVLYIEFKSLDLKRLRVAVNAILKNILLI 229
DV D+ LKGS + F LK ++ SLD L+ + I+ ILL+
Sbjct: 88 DVPASDRALKGSSLFGMFALKERPRWMRISSLD--ELKTKLGHIIVMILLV 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,064,803
Number of Sequences: 37544
Number of extensions: 318943
Number of successful extensions: 796
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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