Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31103
         (666 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61280.1 68414.m06907 expressed protein similar to SP|P57054 ...    67   9e-12
At2g15020.1 68415.m01710 expressed protein  and genefinder             29   2.8  
At5g45380.1 68418.m05577 sodium:solute symporter family protein ...    29   3.7  
At3g02580.1 68416.m00249 delta 7-sterol-C5-desaturase (STE1) ide...    28   4.9  
At1g11590.1 68414.m01330 pectin methylesterase, putative similar...    27   8.5  

>At1g61280.1 68414.m06907 expressed protein similar to SP|P57054
           Down syndrome critical region protein 5 (Down syndrome
           critical region protein C) {Homo sapiens}; expression
           supported by MPSS
          Length = 137

 Score = 67.3 bits (157), Expect = 9e-12
 Identities = 32/83 (38%), Positives = 44/83 (53%)
 Frame = +2

Query: 308 LYGFFLYLFSKTTLTMFCIWAFTPDSFLHYFNIYYYPQKYWSTALPIQFLVALTVFAFLI 487
           +YGF   +       +F IW + PD FL    IYYYP KYW+ A+P+  +V L V A + 
Sbjct: 16  VYGFVGSISIVVATVIFLIWGYVPDKFLESIGIYYYPSKYWAMAMPMYSMVTLLV-ALVF 74

Query: 488 YPSINMILTPHIDSPNTFQDKFS 556
           Y  +N + T    S NT  D +S
Sbjct: 75  YIGLNFMSTSKPTSLNTLFDDYS 97


>At2g15020.1 68415.m01710 expressed protein  and genefinder
          Length = 526

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/87 (22%), Positives = 33/87 (37%)
 Frame = +2

Query: 281 TPAPTPSRSLYGFFLYLFSKTTLTMFCIWAFTPDSFLHYFNIYYYPQKYWSTALPIQFLV 460
           T +PT        F  L  K +   + + + +P+SF   FN+    + +W         V
Sbjct: 96  TRSPTTHDGACTKFEQLEIKPSPVSWVMDSHSPESFSSVFNLILLTRLFWLCVFDAPSEV 155

Query: 461 ALTVFAFLIYPSINMILTPHIDSPNTF 541
               F  L+ P +N +   H     TF
Sbjct: 156 GSFFFQHLLGPHVNALTCQHAPVLRTF 182


>At5g45380.1 68418.m05577 sodium:solute symporter family protein
           contains Pfam profile: PF00474 sodium:solute symporter
           family
          Length = 694

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +2

Query: 458 VALTVFAFLIYPSINMILTPHIDSPNTFQDKFSDFTGKANDKT--FSSNGCIC 610
           VAL VF FL+Y S     +  + SP+   D+  D   K+   T   S +G  C
Sbjct: 228 VALVVFVFLVYTS-----SKELGSPSVVYDRLKDMVAKSRSCTEPLSHHGQAC 275


>At3g02580.1 68416.m00249 delta 7-sterol-C5-desaturase (STE1)
           identical to sterol-C5-desaturase GB:AAD12944 GI:4234768
           from [Arabidopsis thaliana]
          Length = 281

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = -3

Query: 577 ICFTCKIRKLILKSVWTINMWSKYHVNTWINQKSKYS*CYQKLYW*CCGPVFLWI 413
           I FT  I  L ++++WT N+    H N W    + Y   +   Y    G   +W+
Sbjct: 202 IHFTTHIGLLFMEAIWTANIHDCIHGNIWPVMGAGYHTIHHTTYKHNYGHYTIWM 256


>At1g11590.1 68414.m01330 pectin methylesterase, putative similar to
           fruit-specific pectin methylesterase GI:1617583 from
           [Lycopersicon esculentum]
          Length = 524

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +3

Query: 576 MIKLFPQMVVFVRIVIIGEYKRYVDSKEN 662
           ++K+F   ++ + +V+IG  K Y D K++
Sbjct: 2   LVKVFSFFILMITMVVIGVSKEYCDDKQS 30


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,895,342
Number of Sequences: 28952
Number of extensions: 287983
Number of successful extensions: 820
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)