Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31102
(427 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 248 2e-67
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 135 2e-33
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 122 3e-29
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 90 2e-19
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 73 2e-14
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 73 2e-14
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 62 5e-11
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.075
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 29 0.40
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 2.8
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 25 4.9
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 4.9
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.5
SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|... 25 6.5
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 24 8.6
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma... 24 8.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 24 8.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 248 bits (608), Expect = 2e-67
Identities = 108/120 (90%), Positives = 117/120 (97%)
Frame = +3
Query: 66 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 245
++++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 246 RGMLTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 425
RG+LTLKYPIEHGI+ NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 135 bits (327), Expect = 2e-33
Identities = 62/119 (52%), Positives = 83/119 (69%), Gaps = 1/119 (0%)
Frame = +3
Query: 72 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 251
D + +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG
Sbjct: 8 DNQPICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRG 67
Query: 252 MLTLKYPIEHGIITNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREKMTQ 425
+L ++ PIE GII NW DME+IW + + + +L PEEHP+LLTE PL N+EK+ +
Sbjct: 68 LLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAE 126
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 122 bits (293), Expect = 3e-29
Identities = 56/118 (47%), Positives = 83/118 (70%), Gaps = 2/118 (1%)
Frame = +3
Query: 78 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 251
A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++ R
Sbjct: 4 APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRS 63
Query: 252 MLTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 425
+L +KYP+E+GII ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM +
Sbjct: 64 LLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 89.8 bits (213), Expect = 2e-19
Identities = 52/138 (37%), Positives = 71/138 (51%), Gaps = 24/138 (17%)
Frame = +3
Query: 84 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 212
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 213 ------DSYVGDEAQSKRGM-LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPV 371
D ++G++A K +L YPI HG I NWD ME+ W + + LR PE+H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 372 LLTEAPLNPKANREKMTQ 425
LLTE PLNP NRE +
Sbjct: 127 LLTEPPLNPPENRENTAE 144
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 72.9 bits (171), Expect = 2e-14
Identities = 41/116 (35%), Positives = 62/116 (53%)
Frame = +3
Query: 69 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 248
D+V+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 249 GMLTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 416
GM +K I +G + NWD +W + +L+ P EHP+L+TE NP NR K
Sbjct: 62 GM-EIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVK 116
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 72.5 bits (170), Expect = 2e-14
Identities = 44/138 (31%), Positives = 77/138 (55%), Gaps = 1/138 (0%)
Frame = +3
Query: 15 ESIPASPTQTHTKFKMCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM 194
E + + PT + F+ +D+ LV+DNGS +AG+ G+ P+ VF ++V R R +
Sbjct: 8 EPVFSGPTPS---FQNVSNDIP-LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDR--- 60
Query: 195 VGMGQKDSYVGDEAQSKRGMLTL-KYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPV 371
+ + + VG++ + G ++ + P E +I+NWD ME++ +TF +L + EHP+
Sbjct: 61 -KLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPI 118
Query: 372 LLTEAPLNPKANREKMTQ 425
+TE NP R MT+
Sbjct: 119 CMTEPLANPTYVRSTMTE 136
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 61.7 bits (143), Expect = 5e-11
Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Frame = +3
Query: 69 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 248
+++ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 249 GM--LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 422
+ + +K +GII +W+ W +L+V P E+ +++TE NP++ R+++
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIM 121
Query: 423 Q 425
+
Sbjct: 122 E 122
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.075
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 129 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGMLTLKYP 272
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 28.7 bits (61), Expect = 0.40
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Frame = +3
Query: 84 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGMLTL 263
+V+DNG+ KAGFAG P+ + R + G + ++G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 264 KYPIEH--GIITNWDDMEKIWHHTFYNELRVAPE--EHPVLLTE 383
++ H G + +W +W N + P ++ +LLT+
Sbjct: 58 QFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQ 101
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 2.8
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = +3
Query: 270 PIEHGIITNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQ 425
PI+ G + +W+ ++ W H Y+ L P + +PV L +RE TQ
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQ 167
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 25.0 bits (52), Expect = 4.9
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -1
Query: 325 WCQIFS-MSSQLVMIPCSMGYFRVSIPLLLWASSPT*ESFWPIPTITPWW 179
WC+ S + SQ+ + +G F +++ WA + + P ITPWW
Sbjct: 304 WCKPSSAVLSQIFGVKTGLGLFPLTLD---WAQISSLSN----PLITPWW 346
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 4.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 189 VMVGMGQKDSYVGDEAQSKRGMLTLKYPI 275
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 6.5
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +3
Query: 96 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG-----QKDSYVGDEAQSKR 248
N +GM + R F S VG + VG Q+DSY+ D++ S+R
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSER 373
>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 24.6 bits (51), Expect = 6.5
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +3
Query: 249 GMLTLKYPIEHGIITNWDDME-KIWH--HTFYNELRVAPEEHPVLLTEAPLNP 398
G T P + +I + DD +W+ HTF+++ + P EH + ++++ +NP
Sbjct: 259 GGSTTFVPQGNFVIGSADDRTLNVWNLRHTFHHKGKTRPPEHRI-VSQSIINP 310
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 24.2 bits (50), Expect = 8.6
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +3
Query: 330 FYNELRVAPEEHPVLLTE--APLNPKANREKM 419
+Y L E+HP+LLT+ A L P+ + ++
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRV 1430
>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 319
Score = 24.2 bits (50), Expect = 8.6
Identities = 8/31 (25%), Positives = 17/31 (54%)
Frame = +3
Query: 267 YPIEHGIITNWDDMEKIWHHTFYNELRVAPE 359
YP G++ +W ++E + E+R+ P+
Sbjct: 244 YPRTDGLLFSWSELESMNSENMKPEIRLIPK 274
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.2 bits (50), Expect = 8.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 172 RPTMDGKTARGASSPAKPALHMPEPL 95
RP+ DG+ A G A P++ P P+
Sbjct: 950 RPSNDGRKASGPRPAAPPSIPPPLPV 975
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,732,210
Number of Sequences: 5004
Number of extensions: 36150
Number of successful extensions: 117
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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