Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31100
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p...    30   0.28 

>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
 Frame = -2

Query: 447 NLLLISSLFNGCYYTYKPSYLITLSIKKKTHQNPLRSLKDLSIHRERYR-DRESDFVLYY 271
           N++    + +G  Y       + L+++K+   N   +L DL I R   + D++S+FVLY 
Sbjct: 173 NIVHEEDVVHGSDYLTNVFIAVPLNLEKQ-FLNSYETLTDLVIPRSAKKLDQDSEFVLYT 231

Query: 270 VVIK*ISRNNYIYETR 223
           VV+   + +++I + R
Sbjct: 232 VVVFKKTADSFITKAR 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,583,886
Number of Sequences: 5004
Number of extensions: 50078
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)