Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31100
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g22010.1 68415.m02614 zinc finger (C3HC4-type RING finger) fa...    29   3.0  
At2g28320.1 68415.m03442 pleckstrin homology (PH) domain-contain...    27   9.2  

>At2g22010.1 68415.m02614 zinc finger (C3HC4-type RING finger) family
            protein contains Pfam profile: PF00097 zinc finger, C3HC4
            type (RING finger)
          Length = 1280

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 198  LNEKYIYIIEFHRCNCCVIFT*SLHSIKQSRFLCPYIFPYVCL 326
            + EKY  ++EF +  CCVIF  S +  +   F C Y  P   L
Sbjct: 1025 MQEKY-QVMEFQQRKCCVIFELSSNLARVLEF-CTYAMPQAFL 1065


>At2g28320.1 68415.m03442 pleckstrin homology (PH) domain-containing
           protein / lipid-binding START domain-containing protein
           contains Pfam profiles PF01852: START domain, PF00169:
           PH domain
          Length = 737

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 119 CFHLKLVIASIDGHIDVIH 63
           CF+   V+  +DGH D+IH
Sbjct: 235 CFYQGSVVEHLDGHTDIIH 253


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,628,087
Number of Sequences: 28952
Number of extensions: 231984
Number of successful extensions: 440
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)