Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31098
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    27   2.5  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    27   2.5  
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   4.4  
SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.8  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    26   5.8  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    26   7.7  
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch...    26   7.7  

>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = +2

Query: 458 YEDNELTVR--FKYVNSDTNDGDLYKCGFDYKDSWITVPESDDKYEPDIDVRFALQNAEV 631
           +E+NEL+     + +NS+++ G L    F      +   E+   Y PD+    A +N E+
Sbjct: 28  FEENELSHSDLLRLLNSNSDAGKLEAINFILAQ--MMHGENMSLYFPDVVKLVASENPEI 85

Query: 632 NNKINDYLKNTTTPQPDL 685
              ++ YL       PDL
Sbjct: 86  RRLVHIYLLQYAEFNPDL 103


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 344 KSKYRYVYITARRPLPLKPYTEIKR-LPKLVD 436
           K K  YV  T +RP+PL+ Y  +K+ + K+VD
Sbjct: 441 KKKNIYVISTLKRPVPLEHYLWVKQNMFKIVD 472


>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 18/71 (25%), Positives = 32/71 (45%)
 Frame = +2

Query: 416 RLPKLVDVTQAYWEYEDNELTVRFKYVNSDTNDGDLYKCGFDYKDSWITVPESDDKYEPD 595
           R+ + +D    Y  Y   E+     +VN+    GD  + G   ++ WI   E  DKYE +
Sbjct: 244 RVLRKIDQAGGY-AYGSTEIGGDAVWVNAVRQGGDPLQ-GISPQERWIDKKEEYDKYEWE 301

Query: 596 IDVRFALQNAE 628
           ++ +  +   E
Sbjct: 302 LEQKSTMDEDE 312


>SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 117

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/53 (20%), Positives = 28/53 (52%)
 Frame = +2

Query: 575 DDKYEPDIDVRFALQNAEVNNKINDYLKNTTTPQPDLDTNHLDTKDQVKTEDS 733
           ++ ++P ID R    +A + +++ND  K++++ +  +  N L      +  D+
Sbjct: 19  ENVFQPVIDERTKRLSAHLRDQVNDLTKSSSSKEEGIADNSLKEVSSSEVSDN 71


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
 Frame = +2

Query: 518 DLYKCGFDYKDSWITVPESDDKYEPDIDVRFALQNAEVNNKINDYL---KNTTTPQPDLD 688
           DL     + + S   + ES++  +P ID+   L     +N ++  L   K+T+T +   D
Sbjct: 579 DLENKSMESEQSLQLLSESENDDKPLIDLIPLLAIKRKDNLVSGVLEKGKSTSTSKTKFD 638

Query: 689 TNHLDTKDQVKTEDS 733
           T+ +D  ++ KTE S
Sbjct: 639 TSIVDFIEKPKTEIS 653


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 41  ACCHHGRSHKCRHERPSKCRHGGKLGC 121
           +CC   +   C  E+PS C +G    C
Sbjct: 270 SCCSQEKKSCCTSEKPSCCSNGKSTVC 296


>SPBC56F2.12 |ilv5||acetohydroxyacid
           reductoisomerase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +1

Query: 112 TRLQRGQVDRTPRLQEIRKGYKRTTNRRPEQGPEANR 222
           T  +RG +D TPR  E  K          E G EA R
Sbjct: 325 TTARRGAIDWTPRFLEANKKVLNELYDNVENGNEAKR 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,322,346
Number of Sequences: 5004
Number of extensions: 70017
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)