Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31098
         (846 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0318 - 16620177-16620582,16620686-16620765,16620873-166212...    31   1.2  
05_02_0006 - 5541290-5541961                                           30   2.7  
06_03_0223 - 18391177-18391287,18391570-18392081,18392200-183930...    29   6.2  
01_01_0535 + 3923433-3923932,3924105-3925098                           29   6.2  
12_01_0003 - 11806-12363,12659-13099                                   28   8.1  
11_01_0004 - 13421-13978,14274-14714                                   28   8.1  
08_02_1458 - 27270834-27271320,27271752-27271961,27272627-272736...    28   8.1  
08_02_0940 - 22822391-22822781,22822875-22823053,22823079-228234...    28   8.1  

>09_04_0318 -
           16620177-16620582,16620686-16620765,16620873-16621213,
           16621298-16621559
          Length = 362

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = -2

Query: 299 ARNCRSRTFHECPRFHNRC-TASEDGRRFASGPCSGLRLVVRLYPFRIS*SRGVLSTCPL 123
           AR    +T  +C      C T +E+ RR      + LR +  ++PF +      LS CP 
Sbjct: 227 ARTKLKQTEVDCEYLKRCCETLTEENRRLQK-ELAELRALKTVHPFYMHLPATTLSMCPS 285

Query: 122 CSRVYHHDGTCWAS 81
           C RV  +     AS
Sbjct: 286 CERVASNSAPATAS 299


>05_02_0006 - 5541290-5541961
          Length = 223

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 118 LQRGQVDRTPRLQEIRKGYKRTTNRRPEQGPEANRRPSSEAVQRL 252
           L R +VD+   L+E RKG K+   R+ E+    +  PS  A+  L
Sbjct: 165 LARARVDKGTDLEEGRKGEKKKEERKSEKANGQSIAPSEAAITPL 209


>06_03_0223 -
           18391177-18391287,18391570-18392081,18392200-18393019,
           18393603-18393671,18393973-18394062,18395381-18395575
          Length = 598

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 7/40 (17%), Positives = 23/40 (57%)
 Frame = -3

Query: 739 ILRVFCFHLILSVQMVCVEVRLWCSGIFQIIIDFVVHFSI 620
           +  + CF+ ++ + ++ + V +W +G+  +     +H+S+
Sbjct: 77  LYNLLCFYRVIVIVIIDIMVNIWLNGVHMVEHGLAMHYSM 116


>01_01_0535 + 3923433-3923932,3924105-3925098
          Length = 497

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 355 QIRVHNRAPTTAIETLHGDQEAA*TGRRDSSLLGIRGQR 471
           ++RV   A  TA+ TL  D EAA   R  +  LG++ +R
Sbjct: 432 EVRVTRNAVETAVSTLMNDGEAAQEMRMRAKDLGVKARR 470


>12_01_0003 - 11806-12363,12659-13099
          Length = 332

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -2

Query: 269 ECPRFHNRCTASEDGRRFASGPCSGLRLVVRLYPFRIS*SRGVLSTCPLC 120
           +C  F +  TAS   RRF  G   G  + + L+  R     G +   P+C
Sbjct: 97  DCDSFFSTATASFPRRRFLLGESMGGAVALLLHRLRPDFWTGAILVAPMC 146


>11_01_0004 - 13421-13978,14274-14714
          Length = 332

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -2

Query: 269 ECPRFHNRCTASEDGRRFASGPCSGLRLVVRLYPFRIS*SRGVLSTCPLC 120
           +C  F +  TAS   RRF  G   G  + + L+  R     G +   P+C
Sbjct: 97  DCDSFFSTATASFPRRRFLLGESMGGAVALLLHRLRPDFWTGAILVAPMC 146


>08_02_1458 - 27270834-27271320,27271752-27271961,27272627-27273624,
            27274099-27274195,27274278-27274393,27274465-27274590,
            27275123-27275233,27275347-27275428,27275844-27275989,
            27276457-27276650,27277277-27277388,27277869-27278001,
            27278295-27278437,27278488-27278562,27278830-27278937,
            27279072-27279197,27279752-27279836,27280358-27280440,
            27280545-27280625,27280709-27280789,27281960-27282034,
            27282112-27282498,27282902-27283036
          Length = 1396

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/49 (22%), Positives = 25/49 (51%)
 Frame = +1

Query: 118  LQRGQVDRTPRLQEIRKGYKRTTNRRPEQGPEANRRPSSEAVQRL*KRG 264
            +++ + D TPR      GY  ++  + ++G E +RR     ++ + + G
Sbjct: 1306 MKQNRADTTPRSHTFEPGYHSSSGSQYDEGYEGDRRTGERQLRSMRRSG 1354


>08_02_0940 -
           22822391-22822781,22822875-22823053,22823079-22823428,
           22823522-22823765
          Length = 387

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
 Frame = -2

Query: 299 ARNCRSRTFHECPRFHNRC-TASEDGRRFASGPCSGLRLVVRLYPFRIS*SRGVLSTCPL 123
           AR    +T  +C      C T +E+ RR      + LR +    PF +      LS CP 
Sbjct: 257 ARTKLKQTEVDCEYLKRCCETLTEENRRLHK-ELAELRALKTARPFYMHLPATTLSMCPS 315

Query: 122 CSRVYHHDGTCWAS 81
           C RV  +  T   S
Sbjct: 316 CERVASNPATASTS 329


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,853,014
Number of Sequences: 37544
Number of extensions: 458900
Number of successful extensions: 1328
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1327
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)