Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31098
         (846 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.51 
SB_9851| Best HMM Match : Hint (HMM E-Value=1.30321e-43)               32   0.67 
SB_27714| Best HMM Match : AA_permease (HMM E-Value=0.29)              29   3.6  
SB_44586| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_7529| Best HMM Match : Toxin_29 (HMM E-Value=0.0017)                29   6.3  
SB_7939| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.3  
SB_52901| Best HMM Match : WD40 (HMM E-Value=5.8)                      28   8.3  

>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 86  PSKCRHGGKLGCKGGRWTERPGFKKYGKD 172
           P + R GG  G +GGR    PG +KYG D
Sbjct: 523 PPRGRGGGDFGGRGGRGGTTPGKRKYGAD 551


>SB_9851| Best HMM Match : Hint (HMM E-Value=1.30321e-43)
          Length = 493

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 415 LDLRVGFQWQWSARGYVHVSVFAFDDD 335
           L  R GF W + A+ Y+H SV + D+D
Sbjct: 181 LAYRAGFDWVYRAKAYIHASVKSDDED 207


>SB_27714| Best HMM Match : AA_permease (HMM E-Value=0.29)
          Length = 420

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 121 QRGQVDRTPRLQEIRKGYKRTTNRRPEQGPE 213
           Q GQ    P +QE++KG++  T+++ E+ PE
Sbjct: 101 QTGQKQYRPTIQELQKGFEDDTDQQYEELPE 131


>SB_44586| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 554 WITVPESDDKYEPDIDVRFALQNAEVNNKINDYLKNTTTPQPD 682
           W TV ESDD+ +  +D   A +  EV+ ++  Y  +   P P+
Sbjct: 325 WSTVVESDDRGKYIMDGEEAERLNEVHQQLEQYTSDKKNPDPN 367


>SB_7529| Best HMM Match : Toxin_29 (HMM E-Value=0.0017)
          Length = 691

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/64 (23%), Positives = 25/64 (39%)
 Frame = +2

Query: 512 DGDLYKCGFDYKDSWITVPESDDKYEPDIDVRFALQNAEVNNKINDYLKNTTTPQPDLDT 691
           D +L +C F Y   W       +KY+  +D    ++        ND +   T+   D D 
Sbjct: 617 DSNLLQCRFTYMKCWFDAKNIAEKYQCQLDFNKCMRGPRPTMPANDDVVMGTSNDDDDDD 676

Query: 692 NHLD 703
           +  D
Sbjct: 677 DDDD 680


>SB_7939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 485 FKYVNSDTNDGDLYKCGFDYKDSWITVPESDDKYEPDIDV 604
           F+  + D N  D+  CG D  D        DD Y+ D DV
Sbjct: 1   FRVSHGDANPVDVKSCGDDKNDDDDADYNGDDDYDDDNDV 40


>SB_52901| Best HMM Match : WD40 (HMM E-Value=5.8)
          Length = 127

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 485 FKYVNSDTNDGDLYKCGFDYKDSWITVPESDDKYEPDIDV 604
           F+  + D N  D+  CG D  D        DD Y+ D DV
Sbjct: 1   FRVSHGDANPVDVKSCGDDKNDDDDADYNGDDDYDDDNDV 40


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,535,354
Number of Sequences: 59808
Number of extensions: 561664
Number of successful extensions: 1485
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1468
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)