Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31098
         (846 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15188-11|AAA27954.4| 1226|Caenorhabditis elegans Hypothetical p...    32   0.59 
U39851-8|AAF99879.1|  937|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U53154-5|AAC25853.1|  347|Caenorhabditis elegans Hypothetical pr...    29   5.5  

>L15188-11|AAA27954.4| 1226|Caenorhabditis elegans Hypothetical
           protein C14B9.8 protein.
          Length = 1226

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
 Frame = +2

Query: 467 NELTVRFKYVNSDTNDGDLYKCGFDYKDSWITVPESDDKYE--PDIDVRFALQNAEVNNK 640
           ++ ++R + +  D+ND DL K    YK     + + D  Y+  P       L     + +
Sbjct: 694 HKASMRHRSIALDSNDADLMKLRLAYKSRPRDLQDMDSTYQSPPPTQTPLGLVKEHSSGE 753

Query: 641 INDYLKNTTTPQPDLDTNHLD-TKDQV 718
           +   L  TT    + +T H D T +Q+
Sbjct: 754 LRQQLLKTTRRGAENETTHRDLTAEQM 780


>U39851-8|AAF99879.1|  937|Caenorhabditis elegans Hypothetical
           protein C23G10.8 protein.
          Length = 937

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +1

Query: 142 TPRLQEIRKGYKRTTNRRPEQGPEANRRPSSEAVQRL*KRGHS 270
           T RLQ IR+    T  R   +GP ++  PS  A     + GHS
Sbjct: 757 THRLQSIRRSLADTAERAETEGPSSSTGPSISAPPIPSRPGHS 799


>U53154-5|AAC25853.1|  347|Caenorhabditis elegans Hypothetical
           protein C33G8.10 protein.
          Length = 347

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
 Frame = +2

Query: 38  VAC-CHH--GRSHKCRHERPSKCRHGGKLGCK 124
           ++C C H    SH CRH R  KC   G + CK
Sbjct: 38  ISCTCKHRLATSHPCRHCRMLKCMATGMVKCK 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,617,654
Number of Sequences: 27780
Number of extensions: 403449
Number of successful extensions: 1175
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)