Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31096
         (861 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0001552FC9 Cluster: PREDICTED: hypothetical protein;...    36   1.7  
UniRef50_A3YG00 Cluster: Transcriptional regulator; n=2; Proteob...    35   3.0  
UniRef50_A1ZA02 Cluster: CG16801-PA, isoform A; n=1; Drosophila ...    33   7.0  
UniRef50_A1ZA01 Cluster: CG16801-PB, isoform B; n=5; Endopterygo...    33   7.0  
UniRef50_P21647 Cluster: Outer membrane usher protein mrkC precu...    33   7.0  
UniRef50_A5BM32 Cluster: Putative uncharacterized protein; n=1; ...    33   9.3  

>UniRef50_UPI0001552FC9 Cluster: PREDICTED: hypothetical protein;
           n=1; Mus musculus|Rep: PREDICTED: hypothetical protein -
           Mus musculus
          Length = 52

 Score = 35.5 bits (78), Expect = 1.7
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -3

Query: 709 LICPCP*CACNRIPMLTNTSLYRRARARTVLPTRSGPSSNALPPRN 572
           + C  P  + N  P+L NTS  RR RA  +L  + GP    + PRN
Sbjct: 5   VFCLDPRASGNPEPLLFNTSALRRQRALGLLDHQGGPEHGTISPRN 50


>UniRef50_A3YG00 Cluster: Transcriptional regulator; n=2;
           Proteobacteria|Rep: Transcriptional regulator -
           Marinomonas sp. MED121
          Length = 307

 Score = 34.7 bits (76), Expect = 3.0
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -1

Query: 702 VLVHDAHATESQCSPTQACIGGLGLGQCYPPDRVLHQTPYHLVTVQDLTSQVQHSRA 532
           VL+ +A  + +Q     + + GL   +  P  R +H TP+H  +V  L  Q + SR+
Sbjct: 171 VLMIEAFRSSTQADTVTSLLAGLADARINPAIRAIHDTPHHPWSVTQLADQARLSRS 227


>UniRef50_A1ZA02 Cluster: CG16801-PA, isoform A; n=1; Drosophila
           melanogaster|Rep: CG16801-PA, isoform A - Drosophila
           melanogaster (Fruit fly)
          Length = 532

 Score = 33.5 bits (73), Expect = 7.0
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -3

Query: 736 GRSLMYE-SWLICPCP*CACNRIPMLTNTSLYRRARARTVLPTRSGPSSNAL 584
           GRSL++   W +C C  CA +  P      +Y R R R  LPT +GP +N L
Sbjct: 4   GRSLLFRVPWYVCLCV-CAESAEP-----GVYWRLRLRLGLPTLAGPHTNTL 49


>UniRef50_A1ZA01 Cluster: CG16801-PB, isoform B; n=5;
           Endopterygota|Rep: CG16801-PB, isoform B - Drosophila
           melanogaster (Fruit fly)
          Length = 744

 Score = 33.5 bits (73), Expect = 7.0
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -3

Query: 736 GRSLMYE-SWLICPCP*CACNRIPMLTNTSLYRRARARTVLPTRSGPSSNAL 584
           GRSL++   W +C C  CA +  P      +Y R R R  LPT +GP +N L
Sbjct: 4   GRSLLFRVPWYVCLCV-CAESAEP-----GVYWRLRLRLGLPTLAGPHTNTL 49


>UniRef50_P21647 Cluster: Outer membrane usher protein mrkC
           precursor; n=3; Enterobacteriaceae|Rep: Outer membrane
           usher protein mrkC precursor - Klebsiella pneumoniae
          Length = 828

 Score = 33.5 bits (73), Expect = 7.0
 Identities = 24/83 (28%), Positives = 36/83 (43%)
 Frame = -3

Query: 679 NRIPMLTNTSLYRRARARTVLPTRSGPSSNALPPRNRSRFNVPGTTFTGRDKNRQTNNSG 500
           NR   LT+ + +  +R  +   ++ G + + L   N   + V  TT TGR  +   N S 
Sbjct: 579 NRTANLTSNTAFNNSRFAS---SQIGVNGS-LDSENNLNYGVSTTTATGRQHDVALNGSY 634

Query: 499 HLRWYTITASNRQ*YLYRNGGAG 431
              W T+  S  Q   YR  G G
Sbjct: 635 RTPWTTLNGSYSQGEGYRQSGVG 657


>UniRef50_A5BM32 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 1262

 Score = 33.1 bits (72), Expect = 9.3
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 307 KCIWRRKLSFRMLSSWYCRNLRRCRSSICK*ATER 411
           K +W   +S+R + S  C NL RC  +I K  T+R
Sbjct: 128 KALWDEYISYRPIPSCRCGNLNRCSCNILKDLTDR 162


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 861,241,566
Number of Sequences: 1657284
Number of extensions: 17596892
Number of successful extensions: 35602
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 34277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35587
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 76243001646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)