Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31096
         (861 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-...    31   1.4  
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    31   1.4  
Z81030-14|CAJ43441.1|   75|Caenorhabditis elegans Hypothetical p...    28   9.8  
AF068713-3|AAC17793.1|  286|Caenorhabditis elegans Serpentine re...    28   9.8  

>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform b protein.
          Length = 1169

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = -3

Query: 736 GRSLMYESWLICPCP*CACNRIPMLTNTSLYRRARARTVLPTRSGPSSNALPPRNRSRFN 557
           G S+  E W ICP P        M+ N  +  ++  +  LP R+      LPP+     +
Sbjct: 546 GGSVCREGWCICPDP-------SMIVNRGICIQSGPKPTLPPRTPIPQVPLPPQLPISVH 598

Query: 556 VPGTTFT 536
           VP  T T
Sbjct: 599 VPQVTIT 605


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = -3

Query: 736 GRSLMYESWLICPCP*CACNRIPMLTNTSLYRRARARTVLPTRSGPSSNALPPRNRSRFN 557
           G S+  E W ICP P        M+ N  +  ++  +  LP R+      LPP+     +
Sbjct: 643 GGSVCREGWCICPDP-------SMIVNRGICIQSGPKPTLPPRTPIPQVPLPPQLPISVH 695

Query: 556 VPGTTFT 536
           VP  T T
Sbjct: 696 VPQVTIT 702


>Z81030-14|CAJ43441.1|   75|Caenorhabditis elegans Hypothetical
           protein C01G10.17 protein.
          Length = 75

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 523 NRQTNNSGHLRWYTITASNRQ*YLYRNGGAG 431
           N   NN+G+  +Y    +N   Y Y NG +G
Sbjct: 29  NNYNNNNGYTTYYYYPNNNNNGYYYNNGCSG 59


>AF068713-3|AAC17793.1|  286|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 66 protein.
          Length = 286

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 36  MTWHSEC*SVIR*SFLIDLTYTV*NPRNKVF 128
           +TW SE  S+I   F ID+ YT   P NK++
Sbjct: 36  ITWKSEF-SLIYTRFAIDIVYTFFVPHNKIY 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,820,693
Number of Sequences: 27780
Number of extensions: 421170
Number of successful extensions: 842
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)