Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31096
         (861 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54000.3 68416.m05969 expressed protein                             29   5.3  
At3g54000.2 68416.m05968 expressed protein                             29   5.3  
At3g54000.1 68416.m05970 expressed protein                             29   5.3  

>At3g54000.3 68416.m05969 expressed protein
          Length = 301

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -1

Query: 795 ESYWIDLTKRAIRSLLRTETGGP*CMNHG*YVLVHDAHATESQCSPTQACIGGLG 631
           ES+   LT++ + S L+ +  G  C NH  +   +D  A E   SP   C+ G G
Sbjct: 67  ESFLAGLTRQMVMSSLKDDFSGGVCGNHA-FPAGNDHKAWEMNRSP--PCVAGTG 118


>At3g54000.2 68416.m05968 expressed protein
          Length = 301

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -1

Query: 795 ESYWIDLTKRAIRSLLRTETGGP*CMNHG*YVLVHDAHATESQCSPTQACIGGLG 631
           ES+   LT++ + S L+ +  G  C NH  +   +D  A E   SP   C+ G G
Sbjct: 67  ESFLAGLTRQMVMSSLKDDFSGGVCGNHA-FPAGNDHKAWEMNRSP--PCVAGTG 118


>At3g54000.1 68416.m05970 expressed protein
          Length = 352

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -1

Query: 795 ESYWIDLTKRAIRSLLRTETGGP*CMNHG*YVLVHDAHATESQCSPTQACIGGLG 631
           ES+   LT++ + S L+ +  G  C NH  +   +D  A E   SP   C+ G G
Sbjct: 67  ESFLAGLTRQMVMSSLKDDFSGGVCGNHA-FPAGNDHKAWEMNRSP--PCVAGTG 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,547,172
Number of Sequences: 28952
Number of extensions: 386459
Number of successful extensions: 729
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)