Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31095
         (340 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    25   0.28 
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    23   1.1  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   2.6  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   3.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   3.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   3.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   4.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    20   6.0  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    20   8.0  

>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 24.6 bits (51), Expect = 0.28
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 195 RFLKFVLQQSGLNQVQWAPVYTQHSMTTLAIR 100
           R++K VL +SG++   +    T+H+ T+ A R
Sbjct: 268 RWIKMVLAESGVDTSIYTAHSTRHAATSAAAR 299


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = +2

Query: 5   RHEAKWLLCRRQDVS--PSRP-SKYSDVRKPPPQLRI 106
           R   K    R+Q VS  P  P SK S    PPPQL +
Sbjct: 201 RENGKSSAKRKQLVSEHPDSPNSKKSATPSPPPQLEV 237


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 75  SEYLDGLDGLTSCLLH 28
           S Y+DG+  +T C +H
Sbjct: 143 SPYMDGVPFVTQCPIH 158


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +2

Query: 101 RIASVVMECCV*TGAHWT 154
           R+  V M+C      HWT
Sbjct: 179 RLLGVAMDCLKGNAKHWT 196


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 47  SPSRPSKYSDVRKPPP 94
           SP  P +  DV+ PPP
Sbjct: 723 SPLTPHEAFDVKLPPP 738


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 47  SPSRPSKYSDVRKPPP 94
           SP  P +  DV+ PPP
Sbjct: 615 SPLTPHEAFDVKLPPP 630


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 47  SPSRPSKYSDVRKPPPQLRIASV 115
           SP+R     + + P PQ R  SV
Sbjct: 684 SPTRDKSKQNEKSPSPQQRSPSV 706


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 135  YTQHSMTTLAIRNCGGGFLTSE 70
            YTQ+S+   A    G G L+ +
Sbjct: 1069 YTQYSVVVQAFNKVGAGPLSDD 1090


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -2

Query: 231 NHREFFLAEQKDRFLKFVLQQSGLNQVQWAPVYTQHSMTTLAIRN 97
           N R     +QK    +  +++S   + + AP+ T+ S T ++I N
Sbjct: 119 NRRAKCRQQQKQHNQQQSVEKSSKLKNKSAPILTKTSPTPVSINN 163


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,884
Number of Sequences: 336
Number of extensions: 1729
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6558670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)