Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31095
         (340 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...   137   5e-34
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...   137   5e-34
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    42   3e-05
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   3.2  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    24   5.5  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    24   7.3  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    24   7.3  
SPAC30C2.05 |erv14||cornichon family protein Erv14|Schizosacchar...    23   9.6  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  137 bits (331), Expect = 5e-34
 Identities = 61/96 (63%), Positives = 81/96 (84%)
 Frame = +1

Query: 52  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 231
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 232 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDE 339
           DIRV V GGGHV+Q+YAIRQAISKA++A+YQK+VDE
Sbjct: 61  DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDE 96


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =  137 bits (331), Expect = 5e-34
 Identities = 61/96 (63%), Positives = 81/96 (84%)
 Frame = +1

Query: 52  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 231
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 232 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDE 339
           DIRV V GGGHV+Q+YAIRQAISKA++A+YQK+VDE
Sbjct: 61  DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDE 96


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 41.9 bits (94), Expect = 3e-05
 Identities = 26/80 (32%), Positives = 39/80 (48%)
 Frame = +1

Query: 73  GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 252
           G++K++ A      G G   VNG P D+   R++  K      L    + +  ++  TV 
Sbjct: 12  GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVH 70

Query: 253 GGGHVAQVYAIRQAISKALI 312
           GGG   Q  A+  AISK+LI
Sbjct: 71  GGGPTGQSGAVHAAISKSLI 90


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 139  RLHAAFHDHACNTQLRWRFS 80
            RLH+ F++H C + L+  FS
Sbjct: 1062 RLHSLFNEHFCKSNLQLFFS 1081


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 178 TAAVWAQPSPMGARLHAAFHDHACNTQLR 92
           T +V  +  P  AR  AA H +A +TQLR
Sbjct: 375 TPSVKPEMFPKTARPFAAIHANASSTQLR 403


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 32  RRQDVSPSRPSKYSDVR 82
           R  DVSP+RP   S VR
Sbjct: 675 RSTDVSPTRPDSISSVR 691


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -2

Query: 174 QQSGLNQVQWAPVYTQHSMTTLAIRNCGGGFLTSEYLDGLDGLT 43
           Q +G  Q+ W  V T      L + N       ++YLD +D  T
Sbjct: 29  QTNGEEQITWNVVSTDEPSAALYLTNFAVYPTVTQYLDTVDTST 72


>SPAC30C2.05 |erv14||cornichon family protein
           Erv14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 141

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 151 DLVEPRLLQYKLQEPILLLGKE 216
           DLV P ++ + L   +LLLGK+
Sbjct: 53  DLVMPEIISHTLVTLLLLLGKK 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,508,858
Number of Sequences: 5004
Number of extensions: 28651
Number of successful extensions: 67
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)