Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31095
(340 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.) 91 3e-19
SB_2591| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 2e-04
SB_50457| Best HMM Match : Amidase (HMM E-Value=2.6e-36) 32 0.10
SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27) 32 0.14
SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.7
SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.9
SB_9053| Best HMM Match : TIG (HMM E-Value=0) 27 3.9
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30) 27 5.1
SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013) 26 6.8
SB_11752| Best HMM Match : Remorin_C (HMM E-Value=4.6) 26 9.0
SB_21961| Best HMM Match : FlaE (HMM E-Value=1.2) 26 9.0
>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 90.6 bits (215), Expect(2) = 3e-19
Identities = 40/53 (75%), Positives = 49/53 (92%)
Frame = +1
Query: 181 KLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDE 339
K++EPILLLGKE+F VDIRV VKGGGH +++YAIRQAISK+L+A+YQKYVDE
Sbjct: 11 KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIYAIRQAISKSLVAYYQKYVDE 63
Score = 20.6 bits (41), Expect(2) = 3e-19
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +1
Query: 55 QAVQVFGRK 81
Q+VQVFGRK
Sbjct: 3 QSVQVFGRK 11
>SB_2591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 41.1 bits (92), Expect = 2e-04
Identities = 30/88 (34%), Positives = 42/88 (47%)
Frame = +1
Query: 73 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 252
G +K + A A+ +G G + VN RP RL Q K Q + D V
Sbjct: 338 GYRKRSVAKAWVMKGSGKITVNDRPFVEYFSRL-QDKQQILFPFQVVDCVGQFDASCHVL 396
Query: 253 GGGHVAQVYAIRQAISKALIAFYQKYVD 336
GGG Q AIR AIS+AL+ F + +++
Sbjct: 397 GGGLTGQAGAIRLAISRALLNFSEDHLE 424
>SB_50457| Best HMM Match : Amidase (HMM E-Value=2.6e-36)
Length = 391
Score = 32.3 bits (70), Expect = 0.10
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 232 DIRVTVKGGGHVAQVYAIRQAISKALIAF 318
DI+V V GGG Q AI+ I++ALI F
Sbjct: 323 DIKVNVHGGGESGQAGAIKHGITRALIDF 351
>SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27)
Length = 513
Score = 31.9 bits (69), Expect = 0.14
Identities = 16/27 (59%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +3
Query: 258 WSCSTSLRYQTSYFK-GSDRLLPEICR 335
WSCSTS+R +TS FK GS LL + R
Sbjct: 155 WSCSTSMRNRTSIFKAGSVPLLARLIR 181
>SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 28.3 bits (60), Expect = 1.7
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -2
Query: 225 REFFLAEQKDRFLKFVLQQSGLNQ--VQWAP 139
R F + KDR+LK L++ G Q QW P
Sbjct: 12 RSFLFTQDKDRYLKAGLKKYGYGQWTAQWVP 42
>SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 117 SWNAACKRAPIGLG*AQTAAVQTSGTYPFARQGKILYG 230
SW A K+ P G G ++ +G Y R G+ YG
Sbjct: 19 SWQNAEKKKPAGFGRGRSKRGYVNGNYEARRPGERSYG 56
>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
Length = 2990
Score = 27.1 bits (57), Expect = 3.9
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +1
Query: 199 LLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAF 318
L +GKEK +M GGH+ + + + Q K F
Sbjct: 463 LWIGKEKNTMTPSSAPAMPGGHLVRSFKVEQVADKVFKTF 502
>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
Length = 1093
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 189 LKFVLQQSGLNQVQWAPVYT 130
LK SG+N++ W PVYT
Sbjct: 198 LKIQAHTSGVNRLDWNPVYT 217
>SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013)
Length = 873
Score = 26.2 bits (55), Expect = 6.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 152 TWLSPDCCSTNFRNLSFCSARKNSL 226
TW+ P C S+NF + S ++ NS+
Sbjct: 716 TWICPCCGSSNFSSGSIFTSSSNSI 740
>SB_11752| Best HMM Match : Remorin_C (HMM E-Value=4.6)
Length = 192
Score = 25.8 bits (54), Expect = 9.0
Identities = 17/48 (35%), Positives = 19/48 (39%)
Frame = -1
Query: 154 SPMGARLHAAFHDHACNTQLRWRFSYVRILGRPGWAHVLPPAQQPFCL 11
S RL A C R FS V L +P + LPP Q CL
Sbjct: 125 SEYSTRLDTADSIEECAGDSRRLFSIVSSLIKPKQDNPLPPHQDSLCL 172
>SB_21961| Best HMM Match : FlaE (HMM E-Value=1.2)
Length = 816
Score = 25.8 bits (54), Expect = 9.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 97 LRWRFSYVRILGRPGWAHVLPP 32
L +R Y + L +P W+H LPP
Sbjct: 162 LTFRLEYGQQLWKPLWSHKLPP 183
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,055,594
Number of Sequences: 59808
Number of extensions: 254219
Number of successful extensions: 731
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 485763447
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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