Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31095
         (340 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   0.76 
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   1.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   3.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   7.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    20   9.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   9.4  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 0.76
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -2

Query: 267  YMTTTLDCHSDVNHREFFLAEQKD 196
            ++TTT+DC +   + E  + +QK+
Sbjct: 958  HITTTIDCSTQSEYYELEVKDQKN 981


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = -2

Query: 84  FLTSEYLDGLDGLT 43
           F++S +L+GL+GLT
Sbjct: 391 FVSSPFLNGLEGLT 404


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -2

Query: 156  QVQWAPVYTQHSMTTLAIRNCGGGFLTSE 70
            Q+     YTQ+S+   A    G G ++ E
Sbjct: 1043 QIMNLKTYTQYSVVVQAFNKVGSGPMSEE 1071


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
 Frame = +2

Query: 44  VSPSRPSKYSDVRKPPPQLRIASVVME-----CCV*TGAHWT 154
           +S    SK S VRK    L +ASV M      C +    HW+
Sbjct: 252 LSSDNMSKKSPVRKATLFLNMASVFMRIFNLICMMLLIGHWS 293


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 56  WMGSRLASCTAAIL 15
           W+   + SCTA+IL
Sbjct: 117 WVSFDVLSCTASIL 130


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -2

Query: 75   SEYLDGLDGLTSCLLHSSHFASCRI 1
            +EYLD  D + +  +  +HF   ++
Sbjct: 1389 NEYLDKADVIVNTPIMDAHFKDVKL 1413


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,598
Number of Sequences: 438
Number of extensions: 2385
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)