Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31095
         (340 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi...   138   9e-34
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same...   137   2e-33
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)           137   2e-33
At3g49080.1 68416.m05362 ribosomal protein S9 family protein con...    45   1e-05
At1g50650.1 68414.m05694 stigma-specific Stig1 family protein lo...    29   1.0  
At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containi...    27   3.2  
At5g20410.1 68418.m02427 1,2-diacylglycerol 3-beta-galactosyltra...    27   3.2  
At4g11090.1 68417.m01801 expressed protein other hypothetical pr...    27   4.2  
At4g01470.1 68417.m00190 major intrinsic family protein / MIP fa...    27   4.2  
At5g24140.1 68418.m02838 squalene monooxygenase 2 / squalene epo...    26   5.6  
At2g11810.1 68415.m01269 1,2-diacylglycerol 3-beta-galactosyltra...    26   5.6  
At3g23400.1 68416.m02950 plastid-lipid associated protein PAP / ...    26   7.4  
At2g02860.1 68415.m00236 sucrose transporter / sucrose-proton sy...    26   7.4  
At4g24610.1 68417.m03525 expressed protein                             25   9.7  
At2g16410.1 68415.m01879 hypothetical protein similar to zinc fi...    25   9.7  

>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
           to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
           thaliana]
          Length = 146

 Score =  138 bits (334), Expect = 9e-34
 Identities = 58/95 (61%), Positives = 82/95 (86%)
 Frame = +1

Query: 55  QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 234
           ++VQ FGRKKTATAV YCKRG GM+++NG P++L +P +L++K+ EP+LLLGK +F+ VD
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 235 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDE 339
           +R+   GGG+ ++VYAIRQ+I+KAL+A+YQKYVDE
Sbjct: 68  MRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDE 102


>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
           GB:Q42340
          Length = 146

 Score =  137 bits (332), Expect = 2e-33
 Identities = 59/101 (58%), Positives = 84/101 (83%)
 Frame = +1

Query: 37  ARREPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKE 216
           A +   ++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EPILLLGK 
Sbjct: 2   ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKH 61

Query: 217 KFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDE 339
           +F+ V++R+ V GGGH +QVYAIRQ+I+KAL+A+YQKYVDE
Sbjct: 62  RFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDE 102


>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
          Length = 146

 Score =  137 bits (331), Expect = 2e-33
 Identities = 58/101 (57%), Positives = 84/101 (83%)
 Frame = +1

Query: 37  ARREPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKE 216
           A +   ++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EP+LLLGK 
Sbjct: 2   ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKH 61

Query: 217 KFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDE 339
           +F+ V++R+ V GGGH +QVYAIRQ+I+KAL+A+YQKYVDE
Sbjct: 62  RFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDE 102


>At3g49080.1 68416.m05362 ribosomal protein S9 family protein
           contains Pfam profile PF00380: ribosomal protein S9
          Length = 430

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 28/79 (35%), Positives = 42/79 (53%)
 Frame = +1

Query: 73  GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 252
           GR+K + A  + + G G  +VN +  D+  P +L ++      L   +     DI+ TVK
Sbjct: 310 GRRKCSIARVWIQPGEGKFQVNEKEFDVYFP-MLDHRAALLRPLAETKTLGRWDIKCTVK 368

Query: 253 GGGHVAQVYAIRQAISKAL 309
           GGG   QV AI+  IS+AL
Sbjct: 369 GGGTTGQVGAIQLGISRAL 387


>At1g50650.1 68414.m05694 stigma-specific Stig1 family protein low
           similarity to stigma-specific protein STIG1 [Nicotiana
           tabacum] GI:496647; contains Pfam profile PF04885:
           Stigma-specific protein, Stig1
          Length = 174

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = -1

Query: 133 HAAFHDHACNTQLRWRFSYVRILGRPGWAHVLPPAQQPF 17
           H   HD+  NT   W  S+++      W    PP  +P+
Sbjct: 22  HVLGHDNQLNTTSSWLKSHIKAATTTNWGRPKPPMCKPW 60


>At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 588

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 193 PILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAIS 300
           P+L L + K S V+ RV V+  GH+A      +A++
Sbjct: 139 PLLELMRRKMSWVEQRVVVRALGHLASYETTFEAVA 174


>At5g20410.1 68418.m02427 1,2-diacylglycerol
           3-beta-galactosyltransferase, putative /
           monogalactosyldiacylglycerol synthase, putative / MGDG
           synthase, putative identical to
           monogalactosyldiacylglycerol synthase [gi:3367638] from
           Arabidopsis thaliana, similar to MGDG synthase type A
           [gi:9884651] from Glycine max
          Length = 468

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +1

Query: 196 ILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKY 330
           ++ +G E+   V I ++  GGGH A   AIR A     I F  KY
Sbjct: 60  LIQIGAERTKNVLILMSDTGGGHRASAEAIRDAFK---IEFGDKY 101


>At4g11090.1 68417.m01801 expressed protein other hypothetical
           proteins - Arabidopsis thaliana
          Length = 432

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +2

Query: 146 HWTWLSPDCCSTNFRNLSFCSARKNSLW 229
           +W W   DC    F +L F    +N  W
Sbjct: 122 NWKWKPNDCSLPRFDSLRFLQLMRNKSW 149


>At4g01470.1 68417.m00190 major intrinsic family protein / MIP
           family protein contains Pfam profile: MIP PF00230
          Length = 252

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 116 PRLQYATAVAVFLRPNTWTAWMGSRLASCTAAIL 15
           P + +  AV  ++  N W  W+G  + +  AAI+
Sbjct: 200 PAVSFGPAVVSWIWTNHWVYWVGPFIGAAIAAIV 233


>At5g24140.1 68418.m02838 squalene monooxygenase 2 / squalene
           epoxidase 2 (SQP2) identical to SP|O65403
          Length = 516

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +1

Query: 4   SARGKMAAVQEARREPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYK 183
           +A G + A  EARR+    V + G      ++AY     G  RV+    DL EP+    +
Sbjct: 27  AATGDLEAEAEARRDGATDVIIVGAGVAGASLAYALAKDGR-RVHVIERDLKEPQRFMGE 85

Query: 184 LQE 192
           L +
Sbjct: 86  LMQ 88


>At2g11810.1 68415.m01269 1,2-diacylglycerol
           3-beta-galactosyltransferase, putative /
           monogalactosyldiacylglycerol synthase, putative / MGDG
           synthase, putative identical to
           monogalactosyldiacylglycerol synthase type C
           [gi:9927295] from Arabidopsis thaliana, similar to MGDG
           synthase type A [gi:9884651] from Glycine max
          Length = 465

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 205 LGKEKFSMVDIRVTVKGGGHVAQVYAIRQA 294
           +G E+   V I ++  GGGH A   AIR A
Sbjct: 67  MGAERIKTVLILMSDTGGGHRASAEAIRDA 96


>At3g23400.1 68416.m02950 plastid-lipid associated protein PAP /
           fibrillin family protein contains Pfam profile PF04755:
           PAP_fibrillin
          Length = 284

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 50  PSRPSKYSDVRKPPPQLR 103
           PS P+  SD R PPP +R
Sbjct: 12  PSPPALLSDHRSPPPSIR 29


>At2g02860.1 68415.m00236 sucrose transporter / sucrose-proton
           symporter (SUC3) identical to sucrose transporter
           [Arabidopsis thaliana] GI:8052190; similar to sucrose
           transporters from [Oryza sativa (japonica
           cultivar-group)] GI:2723471, [Zea mays] GI:5771354,
           [Triticum aestivum] GI:19548165; contains Pfam profile
           PF00083: major facilitator superfamily protein
          Length = 594

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
 Frame = +2

Query: 38  QDVSPSRPSKYSDVRKPPPQLRIASVVMECCV*TGAHWTW-LSPDCCSTNFRNLSFCSAR 214
           +  SPS  S  +D         + ++V+ C V  G  + W L     +   + L    A 
Sbjct: 38  ESASPSNHSDSADGESVSKNCSLVTLVLSCTVAAGVQFGWALQLSLLTPYIQTLGISHAF 97

Query: 215 KNSLWL 232
            + +WL
Sbjct: 98  SSFIWL 103


>At4g24610.1 68417.m03525 expressed protein 
          Length = 1145

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 180 VLQQSGLNQVQWAPVYTQHSMT 115
           +L+   L++V+W+ V TQHS T
Sbjct: 831 LLESCKLDKVKWSGVRTQHSTT 852


>At2g16410.1 68415.m01879 hypothetical protein similar to zinc
          finger protein [Arabidopsis thaliana] GI:976277
          Length = 204

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 61 RPGWAHVLPPAQQPFCLVP 5
          RP W    PP Q P+  VP
Sbjct: 6  RPSWYRDSPPKQLPYAFVP 24


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,226,047
Number of Sequences: 28952
Number of extensions: 164338
Number of successful extensions: 488
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 399440640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)