Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31093
         (767 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46020| Best HMM Match : PHD (HMM E-Value=9.3e-12)                   33   0.34 
SB_31361| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.44 
SB_25624| Best HMM Match : PHD (HMM E-Value=1.3e-17)                   32   0.59 
SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)                      30   2.4  
SB_39703| Best HMM Match : PHD (HMM E-Value=9.3e-12)                   29   4.1  
SB_3432| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-28)                  29   4.1  

>SB_46020| Best HMM Match : PHD (HMM E-Value=9.3e-12)
          Length = 824

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -3

Query: 549 MLKENLSVIGGIDTFRLKTLRQYDICKSNFLLKLRQRDSHWVTNSNWMIPAY 394
           ++KE    I G+    L  +R +D+  S F+  L     HWV  S    P Y
Sbjct: 682 LIKEVNPAIEGLQRPTLGRVRNFDVVSSEFIQILHTGSDHWVCGSTLGCPGY 733


>SB_31361| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -3

Query: 549 MLKENLSVIGGIDTFRLKTLRQYDICKSNFLLKLRQRDSHWVTNSN 412
           ML E   +  G++   L T  Q+ +C+  F   L     HWV  SN
Sbjct: 1   MLHEQSPLCKGLEDTTLGTTLQFSVCREEFAQILHTGQCHWVAVSN 46


>SB_25624| Best HMM Match : PHD (HMM E-Value=1.3e-17)
          Length = 1828

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -3

Query: 549  MLKENLSVIGGIDTFRLKTLRQYDICKSNFLLKLRQRDSHWVTNSNWMIP 400
            ++KE    I G+    L  +R +D+  S F+  L  R  HWV  S+   P
Sbjct: 1072 LIKEVNPAIEGLQRPTLGRVRNFDVVSSEFIQILHTRSDHWVCVSSLGCP 1121



 Score = 31.9 bits (69), Expect = 0.59
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -3

Query: 549  MLKENLSVIGGIDTFRLKTLRQYDICKSNFLLKLRQRDSHWVTNSNWMIP 400
            ++KE    I G+    L  +R +D+  S F+  L  R  HWV  S+   P
Sbjct: 1685 LIKEVNPAIEGLQRPTLGRVRNFDVVSSEFIQILHTRSDHWVCVSSLGCP 1734


>SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)
          Length = 399

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 353 CLCFRKYILCYYC*NLIVK*HLYF 282
           CLCF   ++CY C  L+V  +L F
Sbjct: 123 CLCFTLLVMCYLCCTLLVMDYLCF 146



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -1

Query: 350 LCFRKYILCYYC*NLIVK*HLYF--MYQGLLQFMVKKRSYSYEVL 222
           LCF   ++CY C  L+V  +L F  +  G L F +    Y    L
Sbjct: 274 LCFTLLVMCYLCCTLLVMDYLCFTLLVMGYLCFTLLLMGYKCSTL 318


>SB_39703| Best HMM Match : PHD (HMM E-Value=9.3e-12)
          Length = 886

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -3

Query: 549 MLKENLSVIGGIDTFRLKTLRQYDICKSNFLLKLRQRDSHWVTNSNWMIP 400
           ++KE    I G+    L  +R +D+  S F+  L     HWV  S+   P
Sbjct: 641 LIKEVNPAIEGLQRPTLGRVRNFDVVSSEFIQILHTGSDHWVCVSSLGCP 690



 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -3

Query: 549 MLKENLSVIGGIDTFRLKTLRQYDICKSNFLLKLRQRDSHWVTNSNWMIP 400
           ++KE    I G+    L  +R +D+  S F+  L     HWV  S+   P
Sbjct: 792 LIKEVNPAIEGLQRPTLGRVRNFDVVSSEFIQILHTGSDHWVCVSSLGCP 841


>SB_3432| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-28)
          Length = 343

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -3

Query: 603 IVVLLLFSYFG*KQNHYYMLKENLSVIGGIDTFRLKTLRQYDICKSNFLL 454
           +++L  +  F   QNH   +KEN + I G  T  +K  R   +    FL+
Sbjct: 194 VIILCYYKIFRTIQNHQAAMKENRNSISGPSTQDIKVTRTLFLTVVGFLI 243


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,048,868
Number of Sequences: 59808
Number of extensions: 400241
Number of successful extensions: 582
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)