Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31093
         (767 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical ...    33   0.22 
Z81483-6|CAE53731.1|  277|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical
           protein Y54G2A.38 protein.
          Length = 520

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
 Frame = -3

Query: 648 CLRLHFKQTYLLRVMIVVLLL------FSYFG*KQNHYYMLKENLSVIGGIDTFRLKTLR 487
           C  LHF   Y    M+ ++ L      F YF  ++   ++   ++ +I GI TF  +T+ 
Sbjct: 323 CYFLHFGNAYFQYFMVTLMSLNRTTSIFFYFVNEKIWKFLFPFSIVLIIGITTFCARTI- 381

Query: 486 QYDICKSNFLLKLRQRDSHWVTNSNWMIPAYWNV 385
              +  S + L     D +++ + + ++PAY+N+
Sbjct: 382 ---LATSPYYLYNEVLDMYYIKSDSNILPAYYNI 412


>Z81483-6|CAE53731.1|  277|Caenorhabditis elegans Hypothetical
           protein C43D7.9 protein.
          Length = 277

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +1

Query: 328 NIYFLKHKHRYENYNVNLSYIPVRWYHPITVGHPMRIPL 444
           NI+  +  +++ + +++L +    WYHPI   H +++ L
Sbjct: 130 NIWLQRIVNQFSSGSLDLFFSKSTWYHPILSAHRLQLNL 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,217,743
Number of Sequences: 27780
Number of extensions: 324656
Number of successful extensions: 597
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)