Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31092
(749 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 224 4e-59
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 221 5e-58
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 52 5e-07
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45... 50 2e-06
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45... 50 2e-06
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45... 50 2e-06
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45... 44 8e-05
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi... 36 0.029
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi... 36 0.029
At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C) 35 0.050
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C) 35 0.050
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C) 35 0.050
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 29 4.4
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 224 bits (548), Expect = 4e-59
Identities = 107/187 (57%), Positives = 133/187 (71%)
Frame = +1
Query: 160 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 339
NPLFE+RPK F IG + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLD
Sbjct: 21 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLD 80
Query: 340 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 519
K A LFK+L KYRPE +P ++ G N VT L+E
Sbjct: 81 KNLATSLFKVLLKYRPEDKAAKKERLVKKAQAEAEGKPSESK-KPIVVKYGLNHVTYLIE 139
Query: 520 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 699
+ KAQLVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+KT +CL LT V+
Sbjct: 140 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTASCLCLTTVK 199
Query: 700 SGDRASF 720
+ D+ F
Sbjct: 200 NEDKLEF 206
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 221 bits (539), Expect = 5e-58
Identities = 107/187 (57%), Positives = 131/187 (70%)
Frame = +1
Query: 160 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 339
NPLFE+RPK F IG + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLD
Sbjct: 20 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLD 79
Query: 340 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 519
K A LFKIL KYRPE +P ++ G N VT L+E
Sbjct: 80 KNLATSLFKILLKYRPEDKAAKKERLLNKAQAEAEGKPAESK-KPIVVKYGLNHVTYLIE 138
Query: 520 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 699
+ KAQLVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+KT L LT V+
Sbjct: 139 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTAAALCLTTVK 198
Query: 700 SGDRASF 720
+ D+ F
Sbjct: 199 NEDKLEF 205
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 51.6 bits (118), Expect = 5e-07
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +1
Query: 481 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL--GAL 654
++ G V K + + + L VIA ++ PI+++ LP LC + GVPY V K L
Sbjct: 51 LKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGA 110
Query: 655 VHRKTCTCLALTNVESGD 708
R TC L + GD
Sbjct: 111 TKRPTCCVLVMLKPAKGD 128
>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 50.0 bits (114), Expect = 2e-06
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +1
Query: 481 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 654
++ G N TK + + ++ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94
Query: 655 VHRKTCTCLALTNVES 702
V R C +N S
Sbjct: 95 VTRPVIACSVTSNEAS 110
>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 50.0 bits (114), Expect = 2e-06
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +1
Query: 481 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 654
++ G N TK + + ++ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94
Query: 655 VHRKTCTCLALTNVES 702
V R C +N S
Sbjct: 95 VTRPVIACSVTSNEAS 110
>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +1
Query: 481 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 654
++ G N TK + + ++ +V+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACD 94
Query: 655 VHRKTCTCLALTNVES 702
V R C +N S
Sbjct: 95 VTRPVIACSVTSNEAS 110
>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 160
Score = 44.4 bits (100), Expect = 8e-05
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +1
Query: 499 TVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTC 672
+ TK + + ++ VV+A D +P+E++L LP L VPY V K LG V R
Sbjct: 73 SATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI 132
Query: 673 TCLALTNVES 702
C +N S
Sbjct: 133 ACSVTSNEAS 142
>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 35.9 bits (79), Expect = 0.029
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +1
Query: 490 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 648
G + KL+EK+ AQLVV+A D + + V + ALC V V LG
Sbjct: 47 GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLG 99
>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 35.9 bits (79), Expect = 0.029
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +1
Query: 490 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 648
G + KL+EK+ AQLVV+A D + + V + ALC V V LG
Sbjct: 47 GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLG 99
>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 35.1 bits (77), Expect = 0.050
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +1
Query: 490 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 648
G + KL+EK+ AQL V+A D + + V + ALC + V LG
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99
>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 35.1 bits (77), Expect = 0.050
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +1
Query: 490 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 648
G + KL+EK+ AQL V+A D + + V + ALC + V LG
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99
>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 35.1 bits (77), Expect = 0.050
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +1
Query: 490 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 648
G + KL+EK+ AQL V+A D + + V + ALC + V LG
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99
>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
family protein (MSS2) similar to SMC-related protein MSS2
[Arabidopsis thaliana] GI:9965743; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1053
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -3
Query: 486 SDGIGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 328
+ G+ P+ R +F + +S QP P CF L P L LE + +CS++ +
Sbjct: 971 NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,514,326
Number of Sequences: 28952
Number of extensions: 306543
Number of successful extensions: 843
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -