Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31091
(481 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41021-9|AAQ81276.1| 408|Caenorhabditis elegans Temporarily ass... 33 0.11
U41021-8|AAQ81275.1| 406|Caenorhabditis elegans Temporarily ass... 33 0.11
U41009-4|AAA82280.1| 404|Caenorhabditis elegans Hypothetical pr... 30 1.00
U41009-3|AAO44916.1| 353|Caenorhabditis elegans Hypothetical pr... 30 1.00
U41009-2|AAA82279.1| 404|Caenorhabditis elegans Hypothetical pr... 30 1.00
AL110479-11|CAB54357.1| 363|Caenorhabditis elegans Hypothetical... 30 1.00
AL110479-10|CAD56249.1| 345|Caenorhabditis elegans Hypothetical... 30 1.00
AF016415-2|AAW88413.1| 296|Caenorhabditis elegans Serpentine re... 29 1.3
Z81515-5|CAB04193.2| 238|Caenorhabditis elegans Hypothetical pr... 27 5.3
AF024492-1|AAF98622.2| 314|Caenorhabditis elegans Hypothetical ... 27 5.3
Z72512-4|CAA96666.1| 328|Caenorhabditis elegans Hypothetical pr... 27 9.3
U70857-3|AAN84873.1| 950|Caenorhabditis elegans Na/ca exchanger... 27 9.3
U70857-2|AAM29660.1| 975|Caenorhabditis elegans Na/ca exchanger... 27 9.3
U70857-1|AAM29661.1| 925|Caenorhabditis elegans Na/ca exchanger... 27 9.3
AJ001181-1|CAA04574.1| 925|Caenorhabditis elegans sodium-calciu... 27 9.3
>U41021-9|AAQ81276.1| 408|Caenorhabditis elegans Temporarily
assigned gene nameprotein 24, isoform b protein.
Length = 408
Score = 33.1 bits (72), Expect = 0.11
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -2
Query: 471 IGRIGYRAPPRVFFFFFYLNVC 406
IG G+ APP VF FFF+L C
Sbjct: 348 IGAFGHEAPPLVFKFFFWLGYC 369
>U41021-8|AAQ81275.1| 406|Caenorhabditis elegans Temporarily
assigned gene nameprotein 24, isoform a protein.
Length = 406
Score = 33.1 bits (72), Expect = 0.11
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -2
Query: 471 IGRIGYRAPPRVFFFFFYLNVC 406
IG G+ APP VF FFF+L C
Sbjct: 346 IGAFGHEAPPLVFKFFFWLGYC 367
>U41009-4|AAA82280.1| 404|Caenorhabditis elegans Hypothetical
protein C06E7.1a protein.
Length = 404
Score = 29.9 bits (64), Expect = 1.00
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = +2
Query: 62 IRQDNDNIGV--EGYNTGYETSNGIKAQETGQLKNIGTENEALEVR--GEFAYIGPDGVT 229
+ +D+D++G +G GY T +A L + + E+R GE ++ PD T
Sbjct: 111 VDKDSDDVGAGDQGIMFGYATDETEEAMPLTLLLSHKLNRKLHELRRSGELEWVRPDSKT 170
Query: 230 YAVTYVANEGG 262
A+EGG
Sbjct: 171 QVTIEYASEGG 181
>U41009-3|AAO44916.1| 353|Caenorhabditis elegans Hypothetical
protein C06E7.3b protein.
Length = 353
Score = 29.9 bits (64), Expect = 1.00
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = +2
Query: 62 IRQDNDNIGV--EGYNTGYETSNGIKAQETGQLKNIGTENEALEVR--GEFAYIGPDGVT 229
+ +D+D++G +G GY T +A L + + E+R GE ++ PD T
Sbjct: 60 VDKDSDDVGAGDQGIMFGYATDETEEAMPLTLLLSHKLNRKLHELRRSGELEWVRPDSKT 119
Query: 230 YAVTYVANEGG 262
A+EGG
Sbjct: 120 QVTIEYASEGG 130
>U41009-2|AAA82279.1| 404|Caenorhabditis elegans Hypothetical
protein C06E7.3a protein.
Length = 404
Score = 29.9 bits (64), Expect = 1.00
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = +2
Query: 62 IRQDNDNIGV--EGYNTGYETSNGIKAQETGQLKNIGTENEALEVR--GEFAYIGPDGVT 229
+ +D+D++G +G GY T +A L + + E+R GE ++ PD T
Sbjct: 111 VDKDSDDVGAGDQGIMFGYATDETEEAMPLTLLLSHKLNRKLHELRRSGELEWVRPDSKT 170
Query: 230 YAVTYVANEGG 262
A+EGG
Sbjct: 171 QVTIEYASEGG 181
>AL110479-11|CAB54357.1| 363|Caenorhabditis elegans Hypothetical
protein Y105C5B.12b protein.
Length = 363
Score = 29.9 bits (64), Expect = 1.00
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = +2
Query: 62 IRQDNDNIGV--EGYNTGYETSNGIKAQETGQLKNIGTENEALEVR--GEFAYIGPDGVT 229
+ +D+D++G +G GY T +A L + + E+R GE ++ PD T
Sbjct: 70 VDKDSDDVGAGDQGIMFGYATDETEEAMPLTLLLSHKLNRKLHELRRSGELEWVRPDSKT 129
Query: 230 YAVTYVANEGG 262
A+EGG
Sbjct: 130 QVTIEYASEGG 140
>AL110479-10|CAD56249.1| 345|Caenorhabditis elegans Hypothetical
protein Y105C5B.12a protein.
Length = 345
Score = 29.9 bits (64), Expect = 1.00
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = +2
Query: 62 IRQDNDNIGV--EGYNTGYETSNGIKAQETGQLKNIGTENEALEVR--GEFAYIGPDGVT 229
+ +D+D++G +G GY T +A L + + E+R GE ++ PD T
Sbjct: 52 VDKDSDDVGAGDQGIMFGYATDETEEAMPLTLLLSHKLNRKLHELRRSGELEWVRPDSKT 111
Query: 230 YAVTYVANEGG 262
A+EGG
Sbjct: 112 QVTIEYASEGG 122
>AF016415-2|AAW88413.1| 296|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 29 protein.
Length = 296
Score = 29.5 bits (63), Expect = 1.3
Identities = 11/30 (36%), Positives = 22/30 (73%)
Frame = -2
Query: 441 RVFFFFFYLNVCIIIRIVSQIAWILITNEN 352
R+F++ F L+VC + ++S I+++L +EN
Sbjct: 42 RLFYYRFVLDVCFGLSLLSYISFLLFYSEN 71
>Z81515-5|CAB04193.2| 238|Caenorhabditis elegans Hypothetical
protein F26H11.5 protein.
Length = 238
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 101 NTGYETSNGIKAQETGQLKNIGTENEALE 187
NTG GI A+E+G+ + TE++ L+
Sbjct: 58 NTGLRRMPGISAEESGETQTFETEDDILD 86
>AF024492-1|AAF98622.2| 314|Caenorhabditis elegans Hypothetical
protein F14F9.5 protein.
Length = 314
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +2
Query: 98 YNTGYETSNGIKAQETGQLKNIG--TENEALEVRGEFAYIGPDGVTYAVTY 244
Y+T Y TSNGI+ T + N G EN ++ + PD V Y
Sbjct: 17 YSTSYSTSNGIRLM-TFNIWNSGANVENGQQKIAKHILMVNPDVVALQEVY 66
>Z72512-4|CAA96666.1| 328|Caenorhabditis elegans Hypothetical
protein R07B5.6 protein.
Length = 328
Score = 26.6 bits (56), Expect = 9.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2
Query: 438 VFFFFFYLNVCIII 397
+FFF FY N CI+I
Sbjct: 108 IFFFTFYFNYCILI 121
>U70857-3|AAN84873.1| 950|Caenorhabditis elegans Na/ca exchangers
protein 2, isoformd protein.
Length = 950
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 212 GPDGVTYAVTYVANEGGFQPSAPHIP 289
GPDG+T V Y +G + +IP
Sbjct: 391 GPDGLTVMVDYFTEDGSANAGSDYIP 416
>U70857-2|AAM29660.1| 975|Caenorhabditis elegans Na/ca exchangers
protein 2, isoforma protein.
Length = 975
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 212 GPDGVTYAVTYVANEGGFQPSAPHIP 289
GPDG+T V Y +G + +IP
Sbjct: 391 GPDGLTVMVDYFTEDGSANAGSDYIP 416
>U70857-1|AAM29661.1| 925|Caenorhabditis elegans Na/ca exchangers
protein 2, isoformb protein.
Length = 925
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 212 GPDGVTYAVTYVANEGGFQPSAPHIP 289
GPDG+T V Y +G + +IP
Sbjct: 394 GPDGLTVMVDYFTEDGSANAGSDYIP 419
>AJ001181-1|CAA04574.1| 925|Caenorhabditis elegans sodium-calcium
exchanger protein.
Length = 925
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 212 GPDGVTYAVTYVANEGGFQPSAPHIP 289
GPDG+T V Y +G + +IP
Sbjct: 394 GPDGLTVMVDYFTEDGSANAGSDYIP 419
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,346,230
Number of Sequences: 27780
Number of extensions: 164884
Number of successful extensions: 451
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -