Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31090
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0970 - 33478044-33478399,33478593-33478692,33479181-33480047     32   0.45 
01_06_0496 - 29795490-29796638,29796811-29796870,29798168-297983...    29   2.4  
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716...    28   7.3  
03_02_0649 - 10162202-10162366,10162455-10162533,10162614-101626...    27   9.7  
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437...    27   9.7  

>01_06_0970 - 33478044-33478399,33478593-33478692,33479181-33480047
          Length = 440

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
 Frame = +1

Query: 325 TFSTSRQHESFRHVTELFRHIKRYFSFV-EHLHNFSHWHGVFFKYDKFIRIADNLVLTSG 501
           +FS  R     R ++  +  +     F+     +F HW     K +KF R  DNL+L   
Sbjct: 21  SFSRIRAIVRMRRLSRRWMRVIECLQFICLDYRDFKHW-----KVEKFARFVDNLLLIRS 75

Query: 502 EFSCEPVQLEEFHPVVL*C 558
           +      QL  FH + L C
Sbjct: 76  KVDLHTFQLYWFHYLPLNC 94


>01_06_0496 -
           29795490-29796638,29796811-29796870,29798168-29798371,
           29798739-29798984,29799375-29799464
          Length = 582

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 525 LDWFTTKLTAGQNKIIRNSNEFVIFKEDSVPMTEIMKM 412
           +D F T +T    KI RNS +F     DSVP +++ ++
Sbjct: 278 VDSFQTNMTVEPEKIKRNSRKFSSSAADSVPDSQLSEL 315


>01_01_0908 +
           7158172-7158356,7159436-7159866,7159953-7161061,
           7161372-7162820
          Length = 1057

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 8/24 (33%), Positives = 19/24 (79%)
 Frame = -1

Query: 477 RNSNEFVIFKEDSVPMTEIMKMLD 406
           RN+ + V++ ++S+P T +++M+D
Sbjct: 839 RNAGQVVLYPKESMPATHLLRMMD 862


>03_02_0649 -
           10162202-10162366,10162455-10162533,10162614-10162670,
           10162741-10162847,10163365-10163580,10163690-10163734,
           10164100-10164258,10164714-10164818,10164902-10165084,
           10165490-10165546,10165625-10165720,10166970-10167104,
           10167188-10167262,10167380-10167479,10167682-10167842,
           10167921-10168068,10168706-10169111,10169794-10169860,
           10169953-10170162,10170570-10170711,10170809-10170870,
           10170965-10171037,10171876-10171985,10172087-10172227
          Length = 1032

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 333 TEGGFPFQLFVFVYPFDNKGKDLAPF-ESFVLDNKPLGFPLD 211
           TE   P    +F+  FDN G  LAPF  S + D K +  PL+
Sbjct: 433 TEKRRPCAEALFIILFDNYGVQLAPFVASIIHDVKAVSPPLE 474


>01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,
            4378900-4378970,4379038-4379144,4379241-4379711,
            4379791-4379976,4380132-4380425,4380820-4381434,
            4382219-4382615,4382768-4382850,4383397-4383567,
            4384046-4384243,4384754-4385314,4385401-4385460,
            4385553-4385869,4385980-4386403,4386539-4387006,
            4387093-4387209,4387306-4387427,4387506-4388247,
            4388453-4388485,4388625-4388879,4388975-4389160,
            4390115-4390453,4391293-4392045
          Length = 3017

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 21/85 (24%), Positives = 35/85 (41%)
 Frame = +1

Query: 298  ENKELEWESTFSTSRQHESFRHVTELFRHIKRYFSFVEHLHNFSHWHGVFFKYDKFIRIA 477
            E+ ++ WESTF    + ++   V E    +  +    E    +SH   +F KY      A
Sbjct: 2152 ESSDVAWESTFDHVTESQAEAMVAEWKEFL--WDIPQERAALWSHCQSLFMKYSLPPLQA 2209

Query: 478  DNLVLTSGEFSCEPVQLEEFHPVVL 552
             +  L   E   E +   E H ++L
Sbjct: 2210 GSFFLKHAEAVGEEIPARELHEILL 2234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,882,368
Number of Sequences: 37544
Number of extensions: 363960
Number of successful extensions: 843
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)