Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31090
(645 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15319| Best HMM Match : Transposase_9 (HMM E-Value=3.2) 31 0.80
SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_36107| Best HMM Match : zf-CCHC (HMM E-Value=0.00023) 30 1.9
SB_24180| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_49747| Best HMM Match : RVT_1 (HMM E-Value=2.1e-36) 30 1.9
SB_46950| Best HMM Match : zf-CCHC (HMM E-Value=0.0015) 30 1.9
SB_45147| Best HMM Match : zf-CCHC (HMM E-Value=0.0051) 30 1.9
SB_32803| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38) 30 1.9
SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34) 30 1.9
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14) 30 1.9
SB_13174| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_20046| Best HMM Match : UPAR_LY6 (HMM E-Value=3.2) 29 3.2
SB_44616| Best HMM Match : rve (HMM E-Value=0.012) 29 4.3
SB_19217| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_49488| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_56854| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_24050| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_47225| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_20133| Best HMM Match : Extensin_2 (HMM E-Value=2.1) 27 9.9
SB_57058| Best HMM Match : ROKNT (HMM E-Value=8) 27 9.9
SB_39617| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38) 27 9.9
SB_36835| Best HMM Match : AMP-binding (HMM E-Value=6.2e-13) 27 9.9
SB_25577| Best HMM Match : Mab-21 (HMM E-Value=1e-05) 27 9.9
SB_16103| Best HMM Match : RVP (HMM E-Value=0.027) 27 9.9
>SB_15319| Best HMM Match : Transposase_9 (HMM E-Value=3.2)
Length = 782
Score = 31.1 bits (67), Expect = 0.80
Identities = 23/94 (24%), Positives = 40/94 (42%)
Frame = -1
Query: 354 RLMLPRGTEGGFPFQLFVFVYPFDNKGKDLAPFESFVLDNKPLGFPLDRPVVDALFKVPN 175
R L + G +P QL + V PF KG P++ + + F + R N
Sbjct: 333 RRWLSEPSYGYWPQQLNLAVCPFTQKGN---PYKKAAFERLCIEFGMSRKPDFRWKGGRN 389
Query: 174 MYFKDIFIYHEGERFPYKFNLPSYDTQSNVVPKN 73
D+F+++ GE + + YDT ++ P +
Sbjct: 390 HGLGDVFVFYPGEGYRNVHVIRGYDTAADEYPSH 423
>SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 918
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 546 NWMKFFELDWFTTKLTAGQNKIIRNSNE 463
+W++ F+LDW + KL G+N + + E
Sbjct: 219 SWLRLFKLDWPSMKLVEGKNTALSDLTE 246
>SB_36107| Best HMM Match : zf-CCHC (HMM E-Value=0.00023)
Length = 425
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 546 NWMKFFELDWFTTKLTAGQNKIIRNSNE 463
+W++ F+LDW + KL G+N + + E
Sbjct: 377 SWLRLFKLDWPSIKLVQGKNTALSDLTE 404
>SB_24180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 238
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 546 NWMKFFELDWFTTKLTAGQNKIIRNSNE 463
+W++ F+LDW + KL G+N + + E
Sbjct: 76 SWLRLFKLDWPSIKLVQGKNTALSDLTE 103
>SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2309
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 546 NWMKFFELDWFTTKLTAGQNKIIRNSNE 463
+W++ F+LDW + KL G+N + + E
Sbjct: 293 SWLRLFKLDWPSIKLVQGKNTALSDLTE 320
>SB_49747| Best HMM Match : RVT_1 (HMM E-Value=2.1e-36)
Length = 877
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 546 NWMKFFELDWFTTKLTAGQNKIIRNSNE 463
+W++ F+LDW + KL G+N + + E
Sbjct: 76 SWLRLFKLDWPSIKLVQGKNTALSDLTE 103
>SB_46950| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)
Length = 797
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 546 NWMKFFELDWFTTKLTAGQNKIIRNSNE 463
+W++ F+LDW + KL G+N + + E
Sbjct: 287 SWLRLFKLDWPSIKLVQGKNTALSDLTE 314
>SB_45147| Best HMM Match : zf-CCHC (HMM E-Value=0.0051)
Length = 522
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 546 NWMKFFELDWFTTKLTAGQNKIIRNSNE 463
+W++ F+LDW + KL G+N + + E
Sbjct: 164 SWLRLFKLDWPSIKLVQGKNTALSDLTE 191
>SB_32803| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 546 NWMKFFELDWFTTKLTAGQNKIIRNSNE 463
+W++ F+LDW + KL G+N + + E
Sbjct: 15 SWLRLFKLDWPSIKLVQGKNTALSDLTE 42
>SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)
Length = 1122
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 546 NWMKFFELDWFTTKLTAGQNKIIRNSNE 463
+W++ F+LDW + KL G+N + + E
Sbjct: 399 SWLRLFKLDWPSIKLVQGKNTALSDLTE 426
>SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1696
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 546 NWMKFFELDWFTTKLTAGQNKIIRNSNE 463
+W++ F+LDW + KL G+N + + E
Sbjct: 467 SWLRLFKLDWPSIKLVQGKNTALSDLTE 494
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 546 NWMKFFELDWFTTKLTAGQNKIIRNSNE 463
+W++ F+LDW + KL G+N + + E
Sbjct: 1117 SWLRLFKLDWPSIKLVQGKNTALSDLTE 1144
>SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34)
Length = 837
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 546 NWMKFFELDWFTTKLTAGQNKIIRNSNE 463
+W++ F+LDW + KL G+N + + E
Sbjct: 143 SWLRLFKLDWPSMKLVEGKNTALSDLTE 170
>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
Length = 1217
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 546 NWMKFFELDWFTTKLTAGQNKIIRNSNE 463
+W++ F+LDW + KL G+N + + E
Sbjct: 176 SWLRLFKLDWPSIKLVQGKNTALSDLTE 203
>SB_13174| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1108
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/73 (24%), Positives = 31/73 (42%)
Frame = -1
Query: 291 PFDNKGKDLAPFESFVLDNKPLGFPLDRPVVDALFKVPNMYFKDIFIYHEGERFPYKFNL 112
PF KG P++ + + F L R N D+F+++ GE + +
Sbjct: 155 PFTQKGN---PYKKAAFERLCIEFGLPRKPDFRWKGGRNHGLDDVFVFYPGEGYRNMHVI 211
Query: 111 PSYDTQSNVVPKN 73
P YDT ++ P +
Sbjct: 212 PGYDTAADEYPSH 224
>SB_20046| Best HMM Match : UPAR_LY6 (HMM E-Value=3.2)
Length = 419
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 546 NWMKFFELDWFTTKLTAGQNKIIRNSNE 463
+W++ F+LDW + KL G+N + + E
Sbjct: 349 SWLRLFKLDWPSIKLVQGKNIALSDLTE 376
>SB_44616| Best HMM Match : rve (HMM E-Value=0.012)
Length = 1189
Score = 28.7 bits (61), Expect = 4.3
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = -1
Query: 327 GGFPFQLFVFVYPFDNKGKDLAPFESFVLDNKPLGFPLDRPVVDALFKVPNMYFK-DIFI 151
G +P QL V PF KG P++ + + F L R D +K + D+F+
Sbjct: 376 GYWPQQLNFAVCPFTQKGN---PYKKAAFERLCIEFSLPRKP-DFRWKGGRNHGPGDVFV 431
Query: 150 YHEGERFPYKFNLPSYDTQSNVVPKN 73
++ GE + + YDT ++ P +
Sbjct: 432 FYPGEGYRNVHVILGYDTAADEYPSH 457
>SB_19217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 28.7 bits (61), Expect = 4.3
Identities = 23/85 (27%), Positives = 36/85 (42%)
Frame = -1
Query: 327 GGFPFQLFVFVYPFDNKGKDLAPFESFVLDNKPLGFPLDRPVVDALFKVPNMYFKDIFIY 148
G +P QL V PF KG P++ V + + F L R N D+F++
Sbjct: 238 GYWPQQLNFAVCPFTQKGN---PYKKAVFERLCIEFGLPRNPDFRWKGGRNHGLGDVFVF 294
Query: 147 HEGERFPYKFNLPSYDTQSNVVPKN 73
+ GE + YDT ++ P +
Sbjct: 295 YPGEGNRNVHVIRGYDTAADEYPSH 319
>SB_49488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1228
Score = 28.3 bits (60), Expect = 5.7
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -1
Query: 546 NWMKFFELDWFTTKLTAGQNKIIRNSNE 463
+W++ F+L+W + KL G+N + + E
Sbjct: 344 SWLRLFKLEWPSIKLVQGKNTALSDLTE 371
Score = 28.3 bits (60), Expect = 5.7
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -1
Query: 546 NWMKFFELDWFTTKLTAGQNKIIRNSNE 463
+W++ F+L+W + KL G+N + + E
Sbjct: 827 SWLRLFKLEWPSIKLVQGKNTALSDLTE 854
>SB_56854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -2
Query: 212 IAPLLMHYSRFLTCISRIFSFTTRVNGSLTNSIFLRMTHS 93
I PL+ L C+S + T ++GSL++ + ++TH+
Sbjct: 45 ILPLVPRPKELLECVSNMRLLTWLLHGSLSHMVHSKITHA 84
>SB_24050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/73 (26%), Positives = 31/73 (42%)
Frame = -1
Query: 291 PFDNKGKDLAPFESFVLDNKPLGFPLDRPVVDALFKVPNMYFKDIFIYHEGERFPYKFNL 112
PF KGK P++ + + F L R L N D+F+++ GE + +
Sbjct: 203 PFTQKGK---PYKKAAFERLCIEFGLPRKPDFRLKGGRNHGLGDVFVFYPGEGYRNVHVI 259
Query: 111 PSYDTQSNVVPKN 73
YDT + P +
Sbjct: 260 RGYDTAMDEYPSH 272
>SB_47225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/73 (24%), Positives = 31/73 (42%)
Frame = -1
Query: 291 PFDNKGKDLAPFESFVLDNKPLGFPLDRPVVDALFKVPNMYFKDIFIYHEGERFPYKFNL 112
PF KG P++ + + F L R N D+F+++ GER+ +
Sbjct: 186 PFTQKGN---PYKKAAFERLCIEFGLPRKPDFRWKGGRNHGLGDVFVFYPGERYRNVHVI 242
Query: 111 PSYDTQSNVVPKN 73
YDT ++ P +
Sbjct: 243 RGYDTAADEYPSH 255
>SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1967
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +3
Query: 189 IMHQQRGDPEGSQEAYCQEQKIRKEPSPCLCCRMDRRKQRA 311
++HQ++ E Q++ C E+++ +E + L C + KQRA
Sbjct: 1623 LLHQEKLLKEKQQQSACVEKQVEQELA-LLRCELAEAKQRA 1662
>SB_20133| Best HMM Match : Extensin_2 (HMM E-Value=2.1)
Length = 762
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1
Query: 450 KEDSVPMTEIMKMLDEGKVPFDMSEEFCYMPKRLMLPRGTEGG 322
K++ TE LDE K D+ E Y K+ +P+GT+ G
Sbjct: 592 KKEVSAATESKDALDETKKCKDLPVENAYENKKNYVPQGTQAG 634
>SB_57058| Best HMM Match : ROKNT (HMM E-Value=8)
Length = 200
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -1
Query: 516 FTTKLTAGQNKIIRNSNEFVIFKEDSVPMTEIMKMLDEGKVP 391
+ K TA +K ++NE +E+ +P+ + + D+ VP
Sbjct: 142 YNDKSTAHNDKRTTDNNESTAVREEKIPLPCVASLFDQTAVP 183
>SB_39617| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)
Length = 1084
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -1
Query: 546 NWMKFFELDWFTTKLTAGQNKIIRNSNE 463
+W++ F+LDW + KL +N + + E
Sbjct: 365 SWLRLFKLDWPSIKLVQSKNTALSDLTE 392
>SB_36835| Best HMM Match : AMP-binding (HMM E-Value=6.2e-13)
Length = 874
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 289 WIDENKELEWESTFSTSRQHESFRHVTELFRHIKRYFSF-VEHLHN 423
W D KEL F S H+ F ++T+ + + +Y F V +H+
Sbjct: 402 WGDRLKELIKYKGFQVSTIHDRFGYITDRLKELIKYKGFQVSAIHD 447
>SB_25577| Best HMM Match : Mab-21 (HMM E-Value=1e-05)
Length = 492
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 310 LEWESTFSTSRQHESFRHVTELFRH 384
LEW +FS + + F H+TEL RH
Sbjct: 369 LEWRLSFSNAEK-TLFAHMTELMRH 392
>SB_16103| Best HMM Match : RVP (HMM E-Value=0.027)
Length = 274
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -1
Query: 546 NWMKFFELDWFTTKLTAGQNKIIRNSNE 463
+W++ F+LDW + KL +N + + E
Sbjct: 135 SWLRLFKLDWPSIKLVQSKNTALSDLTE 162
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,998,981
Number of Sequences: 59808
Number of extensions: 439125
Number of successful extensions: 1265
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1263
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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