Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31090
(645 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006617-8|AAF39772.2| 309|Caenorhabditis elegans Hypothetical ... 33 0.13
Z81513-6|CAB04176.1| 341|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z82090-6|CAB51468.1| 278|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z81526-10|CAB51464.1| 278|Caenorhabditis elegans Hypothetical p... 28 6.5
Z70286-4|CAA94291.2| 533|Caenorhabditis elegans Hypothetical pr... 28 6.5
AJ582070-1|CAE46540.1| 533|Caenorhabditis elegans flavin monoox... 28 6.5
Z77665-9|CAB01223.2| 729|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z66500-1|CAA91303.1| 325|Caenorhabditis elegans Hypothetical pr... 27 8.6
U61947-14|ABA29341.1| 413|Caenorhabditis elegans Nuclear hormon... 27 8.6
U61947-13|AAB03131.3| 429|Caenorhabditis elegans Nuclear hormon... 27 8.6
U40416-1|AAA81410.2| 822|Caenorhabditis elegans Protein kinase ... 27 8.6
AY204189-1|AAO39193.1| 429|Caenorhabditis elegans nuclear recep... 27 8.6
AF403714-1|AAK97497.1| 822|Caenorhabditis elegans serine/threon... 27 8.6
>AC006617-8|AAF39772.2| 309|Caenorhabditis elegans Hypothetical
protein C39B5.9 protein.
Length = 309
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +1
Query: 391 RYFSFVEHLHNFSHWHGVFFKYDKFIRIADNLVLTSGEFSCEPVQLEEFHPVVL 552
+Y + HL NF + + F I+I D+L+ S SCE + + E HP+ L
Sbjct: 209 KYIEHLFHLQNFYIYEMIDFSTQAAIKIRDDLMRRSTFESCE-IYIREAHPIEL 261
>Z81513-6|CAB04176.1| 341|Caenorhabditis elegans Hypothetical
protein F26D2.7 protein.
Length = 341
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +1
Query: 226 KRLIVKNKRFERSQVLAFVVEWIDENKELEWE--STFSTSRQHESFRHVTELFRHIKRYF 399
+ +I KN FE S V F++ +EN ++W+ S ++ F++ +F +K YF
Sbjct: 163 REVIRKNFDFEISSVARFIMMPYNENNTIQWKALSLLISAGILICFQYFIFVFFGLKIYF 222
Query: 400 SFVEHLHNFS 429
+ L +FS
Sbjct: 223 NMKLRLKSFS 232
>Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical
protein R05D11.4 protein.
Length = 581
Score = 28.3 bits (60), Expect = 4.9
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +1
Query: 265 QVLAFVVEWIDENKELEWESTFSTSRQHESFRHVTELFRHI--KRYFSFVEHLHNFSHWH 438
+ LAF + IDE EL+ + +S+S + V E R + + Y F+++ N S
Sbjct: 176 KTLAFALPVIDEILELKQRADYSSSNSSKLLAVVLEPTRELAAQTYTEFLKYCANTSISA 235
Query: 439 GVFFKYDKFIRIADNLVLT 495
F + I+ AD LV T
Sbjct: 236 ANFSGEETDIQHADILVST 254
>Z82090-6|CAB51468.1| 278|Caenorhabditis elegans Hypothetical
protein ZK337.5 protein.
Length = 278
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -1
Query: 498 AGQNKIIRNSNEFVIFKEDSVPMTEIMKMLDEGKVPFDMS 379
AG NK NE ++ ++ + +TE+++ ++ KVP D S
Sbjct: 225 AGSNKC----NEHAMWADEGISLTEMLEEIEARKVPVDSS 260
>Z81526-10|CAB51464.1| 278|Caenorhabditis elegans Hypothetical
protein ZK337.5 protein.
Length = 278
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -1
Query: 498 AGQNKIIRNSNEFVIFKEDSVPMTEIMKMLDEGKVPFDMS 379
AG NK NE ++ ++ + +TE+++ ++ KVP D S
Sbjct: 225 AGSNKC----NEHAMWADEGISLTEMLEEIEARKVPVDSS 260
>Z70286-4|CAA94291.2| 533|Caenorhabditis elegans Hypothetical
protein K08C7.2 protein.
Length = 533
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +1
Query: 241 KNKRFERSQVLAFVVEWIDENKELEWESTFSTSRQHESFRHVTELFRHIKRYFSFVE 411
K + E S V+ V I+ +KE+ S F + +F H TE++R++ Y E
Sbjct: 47 KPQETELSSVMKTTV--INTSKEMTAYSDFPPESRMANFMHNTEMYRYLLNYSKHYE 101
>AJ582070-1|CAE46540.1| 533|Caenorhabditis elegans flavin
monooxygenase protein.
Length = 533
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +1
Query: 241 KNKRFERSQVLAFVVEWIDENKELEWESTFSTSRQHESFRHVTELFRHIKRYFSFVE 411
K + E S V+ V I+ +KE+ S F + +F H TE++R++ Y E
Sbjct: 47 KPQETELSSVMKTTV--INTSKEMTAYSDFPPESRMANFMHNTEMYRYLLNYSKHYE 101
>Z77665-9|CAB01223.2| 729|Caenorhabditis elegans Hypothetical
protein K02E11.1 protein.
Length = 729
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 13 SFYIFFGILRMQNSSVY*NLIFWNNIRLCVIRRKIEF 123
+FY FGILR + S + W +++L + K++F
Sbjct: 520 AFYKKFGILRTSSQSDEEGISSWESVKLAFEKSKMQF 556
>Z66500-1|CAA91303.1| 325|Caenorhabditis elegans Hypothetical
protein T05C12.1 protein.
Length = 325
Score = 27.5 bits (58), Expect = 8.6
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = +1
Query: 268 VLAFVVEWIDENKELEWE 321
+LA+ V+++D+N E EW+
Sbjct: 304 ILAYCVKFVDDNAEFEWD 321
>U61947-14|ABA29341.1| 413|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 105, isoform b protein.
Length = 413
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = +1
Query: 466 IRIADNLVLTSGEFSCEPVQLEEFHPV----VL*CERYSVVIVFGSQED 600
IR+++ L LT G C LEE HP + + YS ++FG D
Sbjct: 364 IRVSEILNLTGGVEQCAARALEEMHPTRVFNLSSFDPYSSNVIFGYYRD 412
>U61947-13|AAB03131.3| 429|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 105, isoform a protein.
Length = 429
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = +1
Query: 466 IRIADNLVLTSGEFSCEPVQLEEFHPV----VL*CERYSVVIVFGSQED 600
IR+++ L LT G C LEE HP + + YS ++FG D
Sbjct: 380 IRVSEILNLTGGVEQCAARALEEMHPTRVFNLSSFDPYSSNVIFGYYRD 428
>U40416-1|AAA81410.2| 822|Caenorhabditis elegans Protein kinase
protein 29 protein.
Length = 822
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
Frame = -1
Query: 441 SVPMTEIMKMLDEG----KVPFDMSEEFCYMP-----KRLMLPRGTEGG 322
++P TE++ L K+PF S E Y P +RL LP G E G
Sbjct: 729 TLPFTEVIDELKASLNILKIPFSESHEMVYEPQVTEMRRLSLPSGVEIG 777
>AY204189-1|AAO39193.1| 429|Caenorhabditis elegans nuclear receptor
NHR-105 protein.
Length = 429
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = +1
Query: 466 IRIADNLVLTSGEFSCEPVQLEEFHPV----VL*CERYSVVIVFGSQED 600
IR+++ L LT G C LEE HP + + YS ++FG D
Sbjct: 380 IRVSEILNLTGGVEQCAARALEEMHPTRVFNLSSFDPYSSNVIFGYYRD 428
>AF403714-1|AAK97497.1| 822|Caenorhabditis elegans serine/threonine
kinase KIN-29 protein.
Length = 822
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
Frame = -1
Query: 441 SVPMTEIMKMLDEG----KVPFDMSEEFCYMP-----KRLMLPRGTEGG 322
++P TE++ L K+PF S E Y P +RL LP G E G
Sbjct: 729 TLPFTEVIDELKASLNILKIPFSESHEMVYEPQVTEMRRLSLPSGVEIG 777
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,104,750
Number of Sequences: 27780
Number of extensions: 341330
Number of successful extensions: 911
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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