Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31088
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    29   0.63 
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    29   0.83 
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    27   1.9  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   3.4  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   4.4  
SPAC25B8.15c |||wybutosine biosynthesis protein Tyw3|Schizosacch...    26   4.4  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 367  VFVYPYEPTPKESEPFKSVVPDNKPFGYP 281
            + VY + P   +SE F +VV DN    YP
Sbjct: 4194 ILVYQHLPDSSQSETFLNVVTDNSAVDYP 4222


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = -1

Query: 670 VKMFLGPKYDESGFPFSLEDNWMNFY----ELDWFVQKVNPGQSQI 545
           +++FL P    SG  +  +D W++FY    E DW     N G + +
Sbjct: 338 LRIFLFPAVLYSGLQWGAQDAWLSFYLTTEEEDWMEAPYNYGDNAV 383


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 2/92 (2%)
 Frame = -1

Query: 655 GPKYDESGFPFSLEDNWMNFYELDWFVQKVNPGQSQITRSSTDFAFFKEDSLPMAEIYK- 479
           G  +  S   + ++D          F+  VNP ++  TR +       ++SLPMA  Y  
Sbjct: 233 GSSHSASMQMYEMDDLHPRLRRQSSFISSVNPLEADDTRETLSEGALVQESLPMAYSYSD 292

Query: 478 -LLDQGKIPTDMFNSSDTMPSRLMLPKGTYDG 386
             L   +    +    +  P   + P  T DG
Sbjct: 293 TNLVVSRDSFTLTGDDNLFPEGGLRPANTIDG 324


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = -1

Query: 586 DWFVQKVNPGQSQITRSSTDFAFFKEDSLPMAEI 485
           DW + K+ P   ++T    D  FF  +  P   +
Sbjct: 82  DWVIVKLGPSSGRVTGCEIDTTFFNGNHAPEVSV 115


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +3

Query: 279 NG*PNGLLSGTTDLNGSDSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSVG 458
           +G  +  L  + + N +++   G+Y   N NS   N  +    S SL+G+ S  LN S G
Sbjct: 550 SGMASSFLGSSGNNNNNNNSNSGNYN--NNNSGNNNQQHQQSSS-SLQGLASSFLNSSSG 606


>SPAC25B8.15c |||wybutosine biosynthesis protein
           Tyw3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 237

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 328 EPFKSVVPDNKPFGYPFDRPVLP 260
           E  KS VPD  P G+P D P+ P
Sbjct: 19  EGLKSSVPDASPKGHP-DSPIFP 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,518,909
Number of Sequences: 5004
Number of extensions: 53580
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)