Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31081
         (450 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    52   4e-09
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   6.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   6.2  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 51.6 bits (118), Expect = 4e-09
 Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
 Frame = +2

Query: 86  PSGAGYDYKYGIIRYDNDVAPEG-YHYLYETENKILAEEAGKVENVGTENEGIKVKGFYE 262
           PSG G D    I     +V  +G Y   +ET N I  +E+G+ + V  E   +  +G   
Sbjct: 19  PSG-GADKDAVITSQQLEVNFDGNYINNFETSNGISHQESGQPKQVDNETPVVS-QGSDS 76

Query: 263 YVGPDGVTYRVDYTADENGFVADGAHIP 346
           Y  PDG    + Y ADENGF   G+HIP
Sbjct: 77  YTAPDGQQVSITYVADENGFQVQGSHIP 104


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 244 LDAFVFGANVLDLAG 200
           L AF+FGAN L   G
Sbjct: 53  LSAFLFGANALFTPG 67


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 375 KVILEKKKKKNSRGGPVPN 431
           K+I EK+K KN    P  N
Sbjct: 462 KIIEEKRKNKNKNLTPAVN 480


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,686
Number of Sequences: 438
Number of extensions: 1732
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)