Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31080
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.12c |coq4||ubiquinone biosynthesis protein Coq4|Schizos...    25   3.8  
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe...    24   8.8  
SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit Sen34|Sc...    24   8.8  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    24   8.8  

>SPAC1687.12c |coq4||ubiquinone biosynthesis protein
           Coq4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -1

Query: 436 CIALRSLRILYLYWNVRSGVSNLELHRYHWIKDV 335
           C      R +Y+ W++R+G++   L   +W K++
Sbjct: 219 CEQASRFRRVYIPWSIRNGLNAKTLINVYWEKEL 252


>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -3

Query: 227 KSTSLKVVQWQYKTKFEMICRFQCPIKLCFTICQIILLKFYSCML 93
           KS SLK   W       +I   + PIKL F +  ++ LKF   ML
Sbjct: 129 KSLSLKNKNWT------IISIIEIPIKLHFILNVLLFLKFSEYML 167


>SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit
           Sen34|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 373 NLELHRYHWIKDVIFLS*YIDEFICFGC 290
           NL+++RY   K ++    Y++  + FGC
Sbjct: 174 NLDINRYLMFKSLVDTGFYLNPGLRFGC 201


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 364 VPD*RPRSLRSNTNKEFAKISMR 432
           V D R  SLR NTN+ F  + MR
Sbjct: 692 VVDVRFPSLRYNTNRRFCYVQMR 714


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,622,835
Number of Sequences: 5004
Number of extensions: 32326
Number of successful extensions: 66
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)