Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31080
         (436 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28533| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0065)            29   1.7  
SB_15824| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_46327| Best HMM Match : Rho_N (HMM E-Value=4.2e-05)                 29   1.7  
SB_23097| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  

>SB_28533| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0065)
          Length = 681

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
 Frame = -1

Query: 379 VSNLELHRYHWIKDVIFL-S*YIDE-----FICFGCILNY 278
           +SN E   Y WIKDV+ L S  ID+     F+CF C+ ++
Sbjct: 111 ISNGETSHYCWIKDVMSLVSSQIDKYHHTRFLCFRCLNSF 150


>SB_15824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
 Frame = -1

Query: 379 VSNLELHRYHWIKDVIFL-S*YIDE-----FICFGCILNY 278
           +SN E   Y WIKDV+ L S  ID+     F+CF C+ ++
Sbjct: 457 ISNGETSHYCWIKDVMSLVSSQIDKYHHTRFLCFRCLNSF 496


>SB_46327| Best HMM Match : Rho_N (HMM E-Value=4.2e-05)
          Length = 856

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
 Frame = -1

Query: 379 VSNLELHRYHWIKDVIFL-S*YIDE-----FICFGCILNY 278
           +SN E   Y WIKDV+ L S  ID+     F+CF C+ ++
Sbjct: 475 ISNGETSHYCWIKDVMSLVSSQIDKYHHTRFLCFRCLNSF 514


>SB_23097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 203 QWQYKTKFEMICRFQCPIKLCFTI 132
           Q++YK K      F CP+ LCF I
Sbjct: 283 QFRYKEKAIRHILFNCPVSLCFRI 306


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,295,769
Number of Sequences: 59808
Number of extensions: 208272
Number of successful extensions: 379
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)