Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31079
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 243 2e-65
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 119 3e-28
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 108 6e-25
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 107 2e-24
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 94 2e-20
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 73 3e-14
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 72 8e-14
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 71 1e-13
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 43 3e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.4
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 27 2.4
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|... 25 7.3
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 25 7.3
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 25 9.6
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 9.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 243 bits (594), Expect = 2e-65
Identities = 110/126 (87%), Positives = 118/126 (93%)
Frame = +2
Query: 2 IGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGI 181
IGNERFR PEALFQPS LG+E+ GIHE YNSIMKCDVDIRKDLY N VMSGGTTMYPGI
Sbjct: 250 IGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGI 309
Query: 182 ADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGI 361
ADRMQKEI ALAPS++K+KI+APPERKYSVWIGGSILASLSTFQQMWISK+EYDESGPGI
Sbjct: 310 ADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGI 369
Query: 362 VHRKCF 379
V+RKCF
Sbjct: 370 VYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 119 bits (287), Expect = 3e-28
Identities = 53/126 (42%), Positives = 84/126 (66%)
Frame = +2
Query: 2 IGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGI 181
+G E F PE LF P +G E+ G+H ++ SI+ D+D+R LY+N V+SGG+T+ G
Sbjct: 255 LGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGF 314
Query: 182 ADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGI 361
+R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+ EEY ++ +
Sbjct: 315 GERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNV 373
Query: 362 VHRKCF 379
+ R+ F
Sbjct: 374 IFRRRF 379
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 108 bits (260), Expect = 6e-25
Identities = 57/127 (44%), Positives = 75/127 (59%), Gaps = 11/127 (8%)
Frame = +2
Query: 5 GNERFRCPEALFQPSFLGMESC---------GIHETVYNSIMKCDVDIRKDLYANTVMSG 157
G ERFR E LF PSF S G+HE VY SI+ CD ++R L N V++G
Sbjct: 292 GQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIVVTG 351
Query: 158 GTTMYPGIADRMQKEITALAP-STIKIKII-APPERKYSVWIGGSILASLSTFQQMWISK 331
GT++ PG+++R+Q E+ LA S I + +VW GGSILASL FQ +W+SK
Sbjct: 352 GTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLWVSK 411
Query: 332 EEYDESG 352
+EYDE G
Sbjct: 412 QEYDEVG 418
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 107 bits (256), Expect = 2e-24
Identities = 54/129 (41%), Positives = 83/129 (64%), Gaps = 12/129 (9%)
Frame = +2
Query: 2 IGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGI 181
+G+ER+ CPE LFQP +G E G+ E ++++I DVDIRK LY V+SGG++MY G+
Sbjct: 250 VGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGL 309
Query: 182 ADRMQKEITAL--------APSTI---KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWI 325
R++KEI L P+ + K+KI P R+++V+IGG++LA ++ MW+
Sbjct: 310 PSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWV 369
Query: 326 SKEEYDESG 352
SK E++E G
Sbjct: 370 SKAEWEEYG 378
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 93.9 bits (223), Expect = 2e-20
Identities = 46/108 (42%), Positives = 70/108 (64%), Gaps = 6/108 (5%)
Frame = +2
Query: 71 GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAP 250
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 251 P---ERKYSVWIGGSILASLSTFQQMWISKEEYDESGP---GIVHRKC 376
ER Y+ W+GGSIL+SL TF Q+WIS++EY+E G ++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 73.3 bits (172), Expect = 3e-14
Identities = 41/124 (33%), Positives = 61/124 (49%)
Frame = +2
Query: 2 IGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGI 181
+ NERF PE LF PS + + GI E V S+ +I+ L N V GG +PG
Sbjct: 276 LSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGF 335
Query: 182 ADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGI 361
R+ E+ +LAP+ ++K+ P + W S + L + I++ EY E G I
Sbjct: 336 HKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEHGANI 394
Query: 362 VHRK 373
+ RK
Sbjct: 395 MTRK 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 71.7 bits (168), Expect = 8e-14
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 15/138 (10%)
Frame = +2
Query: 2 IGNERFRCPEALFQPSFLGMESCG-IHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPG 178
+G ERF PE F P + + E V N + +D+RK LY N V+SGG+T++
Sbjct: 282 VGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKN 341
Query: 179 IADRMQKEITALAPSTI--------------KIKIIAPPERKYSVWIGGSILASLSTFQQ 316
+R+Q+++ + I + +I+ ++ +VW GGS+LA F
Sbjct: 342 FGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGS 401
Query: 317 MWISKEEYDESGPGIVHR 370
+K +Y+E G I R
Sbjct: 402 YCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 70.9 bits (166), Expect = 1e-13
Identities = 32/115 (27%), Positives = 62/115 (53%)
Frame = +2
Query: 11 ERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADR 190
E+ R PE +F PS +G++ GI E + + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 191 MQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGP 355
+++E+T++ P I + W G S + F+ +++EEY E GP
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGP 708
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 43.2 bits (97), Expect = 3e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +2
Query: 125 KDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILA 295
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 296 SLSTFQQMWISKEEYDESGPGIVHRK 373
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = +2
Query: 272 WIGGSILASLSTFQQM---WISKEEYDESGPGIVHRK 373
++GGSI+A S + + +++ EEY + GP +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 197 KEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 307
KEI++ A S I + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 435 ELGRAQHHTAPGSRGRAA*KHLRWT 361
E+ R++ H+ PGS+G A +L WT
Sbjct: 46 EISRSETHSIPGSKGEA---NLIWT 67
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 7.3
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 76 PRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGD 204
PR+ V R+R P P + R V PR RRQ +G+
Sbjct: 41 PRELVAQSTTSRKRDPNQPTPRERTVNKKADQPRRRRQAPQGN 83
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 223 DHQDQDHRSPREEVLRMDRWIHPG 294
D D+ R+ E VLRM R++ PG
Sbjct: 499 DIDDKKDRALSEHVLRMHRYLPPG 522
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.0 bits (52), Expect = 9.6
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +3
Query: 426 VRVLNATVSTLYLVIP--EN*TSNLTPSILM*FIVKFYINLISFLFLLYTRDRCGSQR 593
VR +A S +L P N SN TP+ + I K N+ S + L D C R
Sbjct: 575 VRFFHAIQSHFHLEGPIRYNMNSNCTPNSIASIIQKKSYNVSSITYELLNEDACALSR 632
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,287,098
Number of Sequences: 5004
Number of extensions: 42749
Number of successful extensions: 129
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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