Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31079
(657 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 257 5e-69
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 257 7e-69
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 256 2e-68
SB_56| Best HMM Match : Actin (HMM E-Value=0) 256 2e-68
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 255 2e-68
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 254 6e-68
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 230 9e-61
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 85 5e-17
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 84 1e-16
SB_54| Best HMM Match : Actin (HMM E-Value=0) 71 6e-13
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 68 8e-12
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 38 0.005
SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) 32 0.47
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 4.4
SB_7681| Best HMM Match : Annexin (HMM E-Value=0) 29 4.4
SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_24438| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 28 5.8
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_10094| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_45720| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85) 28 7.7
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 257 bits (630), Expect = 5e-69
Identities = 118/126 (93%), Positives = 122/126 (96%)
Frame = +2
Query: 2 IGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGI 181
IGNERFRCPEAL QPSFLGMES GIHET YNSIMKCDVDIRKDLYANTVMSGGTTMYPG+
Sbjct: 224 IGNERFRCPEALLQPSFLGMESSGIHETTYNSIMKCDVDIRKDLYANTVMSGGTTMYPGL 283
Query: 182 ADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGI 361
ADRMQKEI+ALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP I
Sbjct: 284 ADRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAI 343
Query: 362 VHRKCF 379
VHRKCF
Sbjct: 344 VHRKCF 349
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 257 bits (629), Expect = 7e-69
Identities = 117/126 (92%), Positives = 122/126 (96%)
Frame = +2
Query: 2 IGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGI 181
IGNERFRCPEA+FQPSFLGMES GIHET YNSIMKCDVDIRKDLYANTV+SGGTTMYPGI
Sbjct: 213 IGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGI 272
Query: 182 ADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGI 361
ADRMQKEI+ALAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP I
Sbjct: 273 ADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAI 332
Query: 362 VHRKCF 379
VHRKCF
Sbjct: 333 VHRKCF 338
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 256 bits (626), Expect = 2e-68
Identities = 116/126 (92%), Positives = 122/126 (96%)
Frame = +2
Query: 2 IGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGI 181
IGNERFRCPEA+FQPSFLGMES GIHET YNSIMKCDVDIRKDLYANTV+SGG+TMYPGI
Sbjct: 251 IGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGI 310
Query: 182 ADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGI 361
ADRMQKEIT+LAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP I
Sbjct: 311 ADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 370
Query: 362 VHRKCF 379
VHRKCF
Sbjct: 371 VHRKCF 376
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 256 bits (626), Expect = 2e-68
Identities = 116/126 (92%), Positives = 122/126 (96%)
Frame = +2
Query: 2 IGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGI 181
IGNERFRCPEA+FQPSFLGMES GIHET YNSIMKCDVDIRKDLYANTV+SGG+TMYPGI
Sbjct: 250 IGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGI 309
Query: 182 ADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGI 361
ADRMQKEIT+LAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP I
Sbjct: 310 ADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 369
Query: 362 VHRKCF 379
VHRKCF
Sbjct: 370 VHRKCF 375
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 255 bits (625), Expect = 2e-68
Identities = 116/126 (92%), Positives = 122/126 (96%)
Frame = +2
Query: 2 IGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGI 181
IGNERFRCPEA+FQPSFLGMES GIHET YNSIMKCDVDIRKDLYANTV+SGG+TMYPGI
Sbjct: 251 IGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGI 310
Query: 182 ADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGI 361
ADRMQKEI+ALAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP I
Sbjct: 311 ADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 370
Query: 362 VHRKCF 379
VHRKCF
Sbjct: 371 VHRKCF 376
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 254 bits (621), Expect = 6e-68
Identities = 115/126 (91%), Positives = 122/126 (96%)
Frame = +2
Query: 2 IGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGI 181
IGNERFRCPEA+FQPSFLGMES GIHET YNSIMKCDVDIRKDLYANTV+SGG+TM+PGI
Sbjct: 250 IGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGI 309
Query: 182 ADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGI 361
ADRMQKEI+ALAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP I
Sbjct: 310 ADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 369
Query: 362 VHRKCF 379
VHRKCF
Sbjct: 370 VHRKCF 375
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 230 bits (562), Expect = 9e-61
Identities = 102/126 (80%), Positives = 116/126 (92%)
Frame = +2
Query: 2 IGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGI 181
IGNERFRCPEA+FQP+FLGME+ GIHE +YN IMKCDVDIRKDLY+N V+SGG+TM+PGI
Sbjct: 24 IGNERFRCPEAMFQPAFLGMEAPGIHEAIYNCIMKCDVDIRKDLYSNCVLSGGSTMFPGI 83
Query: 182 ADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGI 361
ADRMQKEI LA +++K+K+IAPPERKYSVWIGGSILASLSTFQQMWI+KEEY E GP I
Sbjct: 84 ADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLSTFQQMWIAKEEYHEYGPPI 143
Query: 362 VHRKCF 379
VHRKCF
Sbjct: 144 VHRKCF 149
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 85.0 bits (201), Expect = 5e-17
Identities = 48/143 (33%), Positives = 73/143 (51%), Gaps = 17/143 (11%)
Frame = +2
Query: 2 IGNERFRCPEALFQPSFLGME-SCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPG 178
+ ERF PE F P F + + + E V N I C +D+R+ LY N V+SGG+TM+
Sbjct: 198 VAYERFLGPEIFFHPEFSNPDFTTPLSEVVDNVIQNCPIDVRRPLYKNIVLSGGSTMFRD 257
Query: 179 IADRMQKEIT----------------ALAPSTIKIKIIAPPERKYSVWIGGSILASLSTF 310
R+Q++I + P I+ ++I+ ++Y+VW GGS+LAS F
Sbjct: 258 FGRRLQRDIKRTVDARLKMSETLSGGRIKPKPIETQVISHHMQRYAVWFGGSMLASTPEF 317
Query: 311 QQMWISKEEYDESGPGIVHRKCF 379
+ +K +YDE GP I F
Sbjct: 318 YSVCHTKADYDEHGPSICRHNPF 340
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 83.8 bits (198), Expect = 1e-16
Identities = 51/146 (34%), Positives = 78/146 (53%), Gaps = 29/146 (19%)
Frame = +2
Query: 2 IGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGI 181
+ ERF PEALFQP + +E G+ E ++N+I D+D R + Y + V+SGG+TMYPG+
Sbjct: 254 LSGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGL 313
Query: 182 ADRMQKEITAL---------------------APSTI-----KIKI-IAPP-ERKYSVWI 277
R+++EI L P T K KI I P RK+ V++
Sbjct: 314 PSRLEREIKQLYLERVLKGDTSKLSSGMGMEQIPLTADYLLQKFKIRIEDPPRRKHMVFM 373
Query: 278 GGSILAS-LSTFQQMWISKEEYDESG 352
GG++LA + W++++EY+E G
Sbjct: 374 GGAVLADIMKDKDSFWMTRKEYEEKG 399
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 71.3 bits (167), Expect = 6e-13
Identities = 30/52 (57%), Positives = 40/52 (76%)
Frame = +2
Query: 2 IGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSG 157
IG+ERFR E LFQPS LG + GIHE+++ SI KCD+D+R +L+ N V+SG
Sbjct: 2295 IGSERFRAAEPLFQPSLLGRDIDGIHESIFKSIKKCDIDLRAELFHNIVLSG 2346
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 67.7 bits (158), Expect = 8e-12
Identities = 29/85 (34%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
Frame = +2
Query: 56 GMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKI 235
G + G+ + V S+ D+DIR L+ + +++GG T+ G +R+ +E+ + P ++++
Sbjct: 146 GSTAMGVTQVVTTSVGMTDIDIRAGLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRL 205
Query: 236 KII---APPERKYSVWIGGSILASL 301
K+I + E++++ WIGGSILASL
Sbjct: 206 KLISNNSSVEKRFNPWIGGSILASL 230
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 54.0 bits (124), Expect = 1e-07
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Frame = +2
Query: 62 ESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPST----- 226
E + + +S++ C +D RK L N V+ GGT M PG R+ +EI L S
Sbjct: 54 EEKSLATALLDSLLLCPIDTRKTLAENIVLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDK 113
Query: 227 --IK-IKIIAPP-ERKYSVWIGGSILASLSTFQQMWISKEEYDE 346
IK +K+ PP + W+GG+I SL ++E Y +
Sbjct: 114 LFIKTVKMHQPPVNANITAWLGGAIFGSLEVLADRSTTRERYQQ 157
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/35 (45%), Positives = 26/35 (74%)
Frame = +2
Query: 74 IHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPG 178
I E + +I K D+D+R+ LY+N V+SGG+T++ G
Sbjct: 257 IIEVLAFAIQKSDLDLRRVLYSNIVLSGGSTLFKG 291
>SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +2
Query: 26 PEALFQPSFLGMESCGIHETV 88
PE +FQPS LG+E GI ET+
Sbjct: 3 PEIIFQPSMLGLEQAGITETM 23
>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
Length = 1079
Score = 31.9 bits (69), Expect = 0.47
Identities = 21/75 (28%), Positives = 36/75 (48%)
Frame = +1
Query: 70 RHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDHRS 249
R P+DR + HH RR H +HR H R++R+ +G+ L+ +D
Sbjct: 830 RPPQDRHRRHHHRRRHHN----NKHRKHSREHSRRRHQRKHHKGNDAQETLEEIFED--D 883
Query: 250 PREEVLRMDRWIHPG 294
R+E +D +++ G
Sbjct: 884 ARDEKENVDEFVNGG 898
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +1
Query: 46 FLPGYGIVRHP-RDRVQLHHEV-RRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRA 219
F+ G G++ H + Q+ E R + G +HRH R +HH ++ R+ + + A
Sbjct: 894 FVNGGGMMEHELQSDSQISQETGARENDPGKKHKHRHRRHHHHRRQHNRKIKKHRRKHSA 953
Query: 220 LDHQ 231
H+
Sbjct: 954 RKHE 957
>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1973
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -1
Query: 288 MDPPIHTEYFLSGGAMILILMVEGARAVISFCILSAIPGYMV-VPPD 151
+DPP+ +Y L+GG ++ ++ FCI G++V PP+
Sbjct: 758 LDPPLENKYNLNGGQQVIQSTLQIQSLFFPFCIFQ---GFVVPTPPE 801
>SB_7681| Best HMM Match : Annexin (HMM E-Value=0)
Length = 426
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Frame = +1
Query: 73 HPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDH--R 246
HP ++ HHE R P H H P ++ E P DH++++
Sbjct: 316 HPPEQ---HHEEEERGVHPPGEHHEEEERGAHPPGQDLEEEERGAHPPGQDHEEEERGAH 372
Query: 247 SPREEVLRMDRWIHP 291
P + +R +HP
Sbjct: 373 PPEQHHEEEERGVHP 387
>SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 140 NTVMSGGTTMYPGIADRMQKEITALAP 220
N ++GG TMY R+++E+ A+ P
Sbjct: 132 NVFVTGGNTMYNNFMARLERELLAIRP 158
>SB_24438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Frame = +1
Query: 70 RHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYR--RQDAEGDHRPR--ALDHQDQ 237
RH R R + R RH RH H R++ R + R R H+
Sbjct: 23 RHERSRHETRQHERSRHKTSRHESSRHKTSRHERSRHKTSRHETSRHERSRHETRQHERS 82
Query: 238 DHRSPREEVLRMDRWIH 288
H++ R E R ++ H
Sbjct: 83 RHKTSRHETSRHEKSRH 99
>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/69 (26%), Positives = 27/69 (39%)
Frame = +1
Query: 25 SRGSLPAFLPGYGIVRHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGD 204
+R ++P LPG H R R HH ++H ++ HH Q +
Sbjct: 930 ARPNMPGTLPGNYPESHKRHRHSHHHH------------YQHYQYNHHHDHQSHQHHDSH 977
Query: 205 HRPRALDHQ 231
H LDH+
Sbjct: 978 HHREVLDHK 986
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 28.3 bits (60), Expect = 5.8
Identities = 30/89 (33%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Frame = +1
Query: 67 VRHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVP-RYRRQDAEGDHRPRALDHQDQD- 240
V HPR V +H HP V HR +H + RQDA DH + + H QD
Sbjct: 606 VVHPRRDV-VHPRQDVVHPRQDVDHHRQDVDHHRQDVDHHRQDA--DHHRQDVVHPRQDV 662
Query: 241 -HRSPREEVLRMDRWIHPGFPVHLPADVD 324
HR + R D H VH D D
Sbjct: 663 VHRRQDADHRRQDADHHRQDVVHPRQDAD 691
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/57 (35%), Positives = 24/57 (42%)
Frame = +1
Query: 76 PRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDHR 246
PRDR + E RRR P R+ R + Y PR RR+ R R D R
Sbjct: 854 PRDRRRRSPEHRRRREASPPRRDR--KRYDSPPRRRRRSPSPPPRRRRRDSYSPSRR 908
>SB_10094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 137 ANTVMSGGTTMYPGIADRMQKEITALAP-STIKIKIIAPPE 256
AN V+ + + +R+ KE+ L +K KIIAPPE
Sbjct: 44 ANPVIHPARKVPVSLGERLDKELNRLTELGIVKEKIIAPPE 84
>SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/73 (24%), Positives = 27/73 (36%)
Frame = +1
Query: 70 RHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDHRS 249
RH R R + R RH RH H R++ E R+ H+ + H
Sbjct: 63 RHERSRHETRQHERSRHKTSRHESSRHKTSRHGRSRHKTSRHETSRHERS-RHETRQHER 121
Query: 250 PREEVLRMDRWIH 288
R + R ++ H
Sbjct: 122 SRHKTSRHEKSRH 134
>SB_45720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Frame = +1
Query: 97 HHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDH--RSPREEVLR 270
HHE R P + H H P ++ E P H++++ P E
Sbjct: 154 HHEEEERGVHPPGQHHEEEERGVHPPGQHHEEEERGVHPPGQHHEEEERGVHPPEEHHEE 213
Query: 271 MDRWIHP 291
+R +HP
Sbjct: 214 EERGVHP 220
>SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85)
Length = 647
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = +1
Query: 67 VRHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDHR 246
++HP ++ H + ++ P + HHVP + +A G+ R Q+ D+
Sbjct: 550 IQHPVEKAIQHAQEKKYQP----ELEKKTIKSHHVPGQDKTEARGEERIAVWSTQNGDYY 605
Query: 247 SPREE 261
R+E
Sbjct: 606 DQRDE 610
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,935,823
Number of Sequences: 59808
Number of extensions: 372660
Number of successful extensions: 1254
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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