Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31076
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    28   1.8  
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    27   2.3  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    27   3.1  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   5.4  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    26   5.4  
SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces pombe...    26   5.4  
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    25   9.4  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    25   9.4  

>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +1

Query: 88  RWYYMYSVMSVLIILNMCIYVYCATLVCRK---PFSSAHIKEMRY 213
           RW   ++V+ +L+IL+M +Y+  ATL        F   HI   +Y
Sbjct: 82  RWKLYFTVLVMLMILDMMLYIDKATLSYSSILGLFEDTHINSNQY 126


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 7/20 (35%), Positives = 16/20 (80%)
 Frame = +1

Query: 430 VEKCLAVVDDAEDECIVHTE 489
           ++ CL+V D+ + +C++HT+
Sbjct: 499 IDSCLSVCDEYDVQCLIHTD 518


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +1

Query: 91   WYYMYSVMSVLIILNMCIYVYCATLVCRKPFSSAHIKEMRYKLWL 225
            W+Y+Y ++  +  L++   +YCA+ +     SS   + M  +LW+
Sbjct: 1978 WWYLYRMLPSVASLSLPFLLYCASFLL-IGISSFINENMYLRLWI 2021


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 85  QRWYYMYSVMSVLIILNMCIYVYCATL-VCRKPFSS 189
           Q WYY + V+ V ++  M      A + V ++P SS
Sbjct: 466 QNWYYAFQVVQVFLVTTMTSAATSAVVQVIKEPASS 501


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = +2

Query: 353 WYLWSCVRALSKPSTSAASSFVCPEWWKNVWPWSMMRRT 469
           W ++  V   S   T  A      +WW N W W    RT
Sbjct: 334 WVIFEGVCNFSAEITRFADRNFYDDWW-NCWTWDQFART 371


>SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 233

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 663 KLVFGSINSIRKPDVTAAAKGSSSLISYITHKY 565
           K  FGS+  I KP+ TA    +S  +  + H +
Sbjct: 83  KAKFGSVYPISKPEYTAEVTDASKEVFVVVHMF 115


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -1

Query: 660 LVFGSINSIRKPDVTAAAKGSSSLISYITHKYYSIT*FYAGGILHLAYGRLF 505
           +V G + +I    +  A+  SS   S++      +  F AGG L++AY  +F
Sbjct: 366 MVTGLLGAIVATYIYTASSSSSPYGSFLLQLEDKLLPFTAGGFLYIAYLGVF 417


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = -1

Query: 483 VHDTFVLRIIDHGQTFFHHSGHTKEEAALVDGFDNARTQDHKYHKH*EAL*SVEDVQYSP 304
           +HD  +   I+H ++    + H   E     GFD+ + +   + K+ + L     ++   
Sbjct: 116 IHDCVLFDAIEHVRSIATIAFHLPTEMVFPGGFDDLKKEILAFDKNAKLL--EFQIRKFQ 173

Query: 303 HNMCFSEC--TDHFEDPKQSH 247
            N+CF E   TD F+  +  H
Sbjct: 174 CNVCFDEFNGTDCFQLTRCGH 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,517,073
Number of Sequences: 5004
Number of extensions: 76211
Number of successful extensions: 196
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)