Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31075
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0845 - 28155065-28155374,28156201-28156342,28156375-281565...    30   2.3  
05_03_0353 - 12856385-12857705,12858007-12858959                       28   9.2  
03_05_0736 - 27254502-27255497                                         28   9.2  

>03_05_0845 -
           28155065-28155374,28156201-28156342,28156375-28156505,
           28156591-28156784,28156859-28156969,28157234-28157399,
           28157501-28157668,28157766-28158787
          Length = 747

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 577 ENEGIKVKGFYEYVGPDGVTYRVDYTAD 660
           E  G +++G   +VGPDG TYR  + AD
Sbjct: 90  EFRGGRIEGQGVFVGPDGATYRGAWAAD 117


>05_03_0353 - 12856385-12857705,12858007-12858959
          Length = 757

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 408 GCDWHGNGRLHDGQGNNAGSLVSITKVFAEVL 313
           GC+W   G    GQ   A S VS T    E+L
Sbjct: 172 GCEWSDPGFFLRGQEEEASSSVSTTTAMEEIL 203


>03_05_0736 - 27254502-27255497
          Length = 331

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +2

Query: 503 ATTTCTRPR--TRFSLKKPARSRTLAPKTKASRS 598
           ATTT + P+  T+F+L + ARS T  P +K+  S
Sbjct: 14  ATTTLSSPQLCTQFALDRVARSTTTIPLSKSKSS 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,000,611
Number of Sequences: 37544
Number of extensions: 284512
Number of successful extensions: 872
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)