Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31075
         (755 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57834| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.58 
SB_46682| Best HMM Match : Fibrinogen_C (HMM E-Value=0.022)            31   0.76 
SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                31   1.3  
SB_34070| Best HMM Match : Mucin (HMM E-Value=5.8)                     29   3.1  
SB_33861| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30)                 29   5.4  
SB_30499| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_43300| Best HMM Match : C2 (HMM E-Value=7.2e-05)                    28   7.1  
SB_3330| Best HMM Match : RBM1CTR (HMM E-Value=0.62)                   28   7.1  
SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23)                    28   9.4  

>SB_57834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +1

Query: 526 ENKILAEEAGKVENVGTENEGIKVKGFYEYVGPDGVTYRVDYTADENGF 672
           EN  L +  GK   + + +  I   G+YEY GP  +  RV   AD  GF
Sbjct: 154 ENSTLTQNCGKW-GISSSSVEINRWGYYEYTGPKRMYARVIVWADHLGF 201


>SB_46682| Best HMM Match : Fibrinogen_C (HMM E-Value=0.022)
          Length = 395

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +1

Query: 517 YETENKILAEEAGKVENVGTENEGIKVKGFYEYVGPDGVTYRVDYTADENGF 672
           + ++N  L +  GK   + + +  I   G+YEY GP  +  RV   AD  GF
Sbjct: 315 FTSKNSTLTQNCGKW-GISSSSVEINRWGYYEYTGPKRMYARVIVWADHLGF 365


>SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 1021

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +1

Query: 91  YNRVYSTVSPFVYKPGR---YVADPGRYDPSRDNSGRYIP 201
           YNR+ +   P++ +PGR   Y   PGR DP     GR  P
Sbjct: 670 YNRLQARDDPYIKQPGRDDPYNKQPGRDDPYIKQPGRDDP 709


>SB_34070| Best HMM Match : Mucin (HMM E-Value=5.8)
          Length = 541

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/43 (44%), Positives = 24/43 (55%)
 Frame = +2

Query: 497 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAP 625
           PK T   TRP+TR   +   R +T  PKTK S+S+  T T  P
Sbjct: 270 PK-TRPKTRPKTRPKTRPKTRPKT-RPKTK-SKSKSKTKTATP 309


>SB_33861| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1205

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = +1

Query: 469 IIRYDNDVAPEGYHYLYETENKILAEEAGKVENVGTENEGIKVKGFYEYVGPDGVTYRVD 648
           I+RYD +  P  Y      E++I  E   K +++     G+   GF+E +G        D
Sbjct: 491 IVRYDRNKVPSLYQLFKFIESRIEFELRTKHKSIFGYALGVIFAGFFEGIGMFKPKLG-D 549

Query: 649 YTADENGFVA 678
              +ENG VA
Sbjct: 550 SKLNENGHVA 559


>SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30)
          Length = 420

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 19  VFLAICLSLTVALAAETGKYTPFQYNRVYSTVSPFVYKP 135
           VFL   +S+TV + +  GKY P  YN   + ++ F + P
Sbjct: 132 VFLVWGISITVGVLSVVGKYEPLAYN--VTVIALFFFLP 168


>SB_30499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 269 PVLLEVPEEPTSEPRRTSANTLVMLTRDPA 358
           PVL     +P S PRR S     +LTR PA
Sbjct: 111 PVLNHTVVQPPSSPRRCSVQLEQILTRSPA 140


>SB_43300| Best HMM Match : C2 (HMM E-Value=7.2e-05)
          Length = 304

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 269 PVLLEVPEEPTSEPRRTSANTLVMLTRDPA 358
           PVL     +P S PRR S     +LTR PA
Sbjct: 86  PVLNHTVVQPPSSPRRCSVQLEQILTRSPA 115


>SB_3330| Best HMM Match : RBM1CTR (HMM E-Value=0.62)
          Length = 546

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = +2

Query: 509 TTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTV 631
           T  T  R R+ +  P RS  L P+ +ASRSRD     APT+
Sbjct: 262 TELTERRKRYFVS-PLRSSCLWPRGRASRSRD--GACAPTM 299


>SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23)
          Length = 877

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -3

Query: 423 AGNVCGCDWHGNGRL-HDGQGN 361
           AG V  CDW G+G L  D +GN
Sbjct: 677 AGRVIACDWSGDGVLVFDSRGN 698


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,906,186
Number of Sequences: 59808
Number of extensions: 312920
Number of successful extensions: 934
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)