BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= epV31075 (755 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical pr... 29 3.6 U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein. 29 3.6 AF026212-4|AAF99973.2| 386|Caenorhabditis elegans Hypothetical ... 29 3.6 Z48783-2|CAC42295.1| 805|Caenorhabditis elegans Hypothetical pr... 28 8.2 Z48783-1|CAA88701.1| 780|Caenorhabditis elegans Hypothetical pr... 28 8.2 AF233652-1|AAF63475.1| 780|Caenorhabditis elegans RFX-type tran... 28 8.2 AF226156-1|AAF61564.1| 805|Caenorhabditis elegans RFX-like tran... 28 8.2 >Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical protein E02H4.1 protein. Length = 664 Score = 29.1 bits (62), Expect = 3.6 Identities = 14/47 (29%), Positives = 24/47 (51%) Frame = -3 Query: 141 AAWLIDEWRNSRVNSVVLERSVLSSFGGQRHCQRQADCQKDTHFRCY 1 +AW D + +N + E + LS+ Q+HC+ CQ+D + Y Sbjct: 501 SAWC-DSTNTTTLNCLTTEGAKLSTKENQKHCKCIQPCQQDQYTTTY 546 >U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein. Length = 664 Score = 29.1 bits (62), Expect = 3.6 Identities = 14/47 (29%), Positives = 24/47 (51%) Frame = -3 Query: 141 AAWLIDEWRNSRVNSVVLERSVLSSFGGQRHCQRQADCQKDTHFRCY 1 +AW D + +N + E + LS+ Q+HC+ CQ+D + Y Sbjct: 501 SAWC-DSTNTTTLNCLTTEGAKLSTKENQKHCKCIQPCQQDQYTTTY 546 >AF026212-4|AAF99973.2| 386|Caenorhabditis elegans Hypothetical protein F52G3.5 protein. Length = 386 Score = 29.1 bits (62), Expect = 3.6 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Frame = +2 Query: 506 TTTCTRPRTRFSL-KKPARSRTLAPKTKASRSRDSTNTLAPT 628 TTT P T KK ++R+ PKT + + +T T APT Sbjct: 195 TTTTEEPSTTSEYRKKSKKNRSKRPKTTKTTTTSTTTTEAPT 236 >Z48783-2|CAC42295.1| 805|Caenorhabditis elegans Hypothetical protein F33H1.1b protein. Length = 805 Score = 27.9 bits (59), Expect = 8.2 Identities = 11/32 (34%), Positives = 17/32 (53%) Frame = +1 Query: 436 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 531 P+G ++ Y I Y N V P G + LY ++ Sbjct: 178 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 209 >Z48783-1|CAA88701.1| 780|Caenorhabditis elegans Hypothetical protein F33H1.1a protein. Length = 780 Score = 27.9 bits (59), Expect = 8.2 Identities = 11/32 (34%), Positives = 17/32 (53%) Frame = +1 Query: 436 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 531 P+G ++ Y I Y N V P G + LY ++ Sbjct: 153 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 184 >AF233652-1|AAF63475.1| 780|Caenorhabditis elegans RFX-type transcription factor DAF-19 short variant protein. Length = 780 Score = 27.9 bits (59), Expect = 8.2 Identities = 11/32 (34%), Positives = 17/32 (53%) Frame = +1 Query: 436 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 531 P+G ++ Y I Y N V P G + LY ++ Sbjct: 153 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 184 >AF226156-1|AAF61564.1| 805|Caenorhabditis elegans RFX-like transcription factor DAF-19 protein. Length = 805 Score = 27.9 bits (59), Expect = 8.2 Identities = 11/32 (34%), Positives = 17/32 (53%) Frame = +1 Query: 436 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 531 P+G ++ Y I Y N V P G + LY ++ Sbjct: 178 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 209 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,929,282 Number of Sequences: 27780 Number of extensions: 227575 Number of successful extensions: 835 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 779 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 832 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1798543458 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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